C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110080 ST3GAL4 9606 + 11:126355640-126440344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000227495 ST3GAL4-008 126355660-126414604 protein_coding
  ENST00000356132 ST3GAL4-201 126403416-126414641 protein_coding
  ENST00000392669 ST3GAL4-011 126403416-126414638 protein_coding
  ENST00000444328 ST3GAL4-009 126355684-126414638 protein_coding
  ENST00000449406 ST3GAL4-005 126406187-126414606 protein_coding
  ENST00000524834 ST3GAL4-007 126406503-126440344 processed_transcript
  ENST00000524860 ST3GAL4-021 126406782-126413997 protein_coding
  ENST00000526311 ST3GAL4-018 126392175-126407627 protein_coding
  ENST00000526727 ST3GAL4-003 126405782-126414638 protein_coding
  ENST00000526756 ST3GAL4-020 126405587-126408498 processed_transcript
  ENST00000528605 ST3GAL4-016 126375020-126408804 retained_intron
  ENST00000528858 ST3GAL4-017 126393228-126408496 protein_coding
  ENST00000530591 ST3GAL4-001 126355894-126414047 protein_coding
  ENST00000531217 ST3GAL4-006 126355660-126414608 nonsense_mediated_decay
  ENST00000532243 ST3GAL4-004 126406195-126414608 protein_coding
  ENST00000533826 ST3GAL4-022 126408450-126414554 retained_intron
  ENST00000534083 ST3GAL4-010 126355974-126414575 protein_coding
  ENST00000534452 ST3GAL4-019 126403218-126407349 protein_coding
  ENST00000534457 ST3GAL4-013 126406460-126414047 protein_coding
  ENST00000534733 ST3GAL4-015 126355640-126407026 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000227495ENST00000444328ENST00000524834ENST00000524860ENST00000526311ENST00000526727ENST00000528858ENST00000530591ENST00000531217ENST00000532243ENST00000533826ENST00000534083ENST00000534452ENST00000534457ENST00000534733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000227495 N/A 5.959±0.00 N/A N/A 2.079±0.98 11.167±0.00 N/A 10.535±0.00 8.759±0.00 9.104±0.00 0.628±0.00 10.872±0.00 12.446±1.41 9.161±1.23
ENST00000444328 10.980±0.00 7.127±0.00 N/A 7.750±7.41 8.005±0.00 12.476±0.00 2.469±0.00 15.414±0.00 12.283±0.00 16.444±0.00 N/A 34.755±27.13 19.725±12.21 30.707±0.00
ENST00000524834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.548±0.00 N/A N/A N/A
ENST00000524860 N/A N/A N/A N/A 2.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526311 N/A N/A N/A 1.272±0.00 N/A N/A N/A 2.305±0.00 N/A N/A N/A N/A N/A N/A
ENST00000526727 N/A N/A N/A 0.259±0.00 0.966±0.00 N/A N/A 1.425±0.00 0.701±0.00 N/A N/A N/A N/A N/A
ENST00000528858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.549±0.00 N/A N/A N/A
ENST00000530591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.871±0.00 N/A N/A
ENST00000531217 N/A N/A N/A N/A N/A 0.992±0.00 8.274±0.00 N/A N/A N/A N/A N/A N/A 9.868±0.00
ENST00000532243 N/A N/A N/A N/A N/A 0.807±0.00 N/A N/A 1.179±0.00 N/A N/A N/A N/A N/A
ENST00000533826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.430±0.03 N/A N/A N/A
ENST00000534083 N/A 2.363±0.00 N/A 0.352±0.00 N/A N/A N/A N/A N/A N/A N/A 16.664±0.00 N/A N/A
ENST00000534452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.824±0.00 N/A N/A
ENST00000534457 N/A N/A 1.458±0.00 3.648±2.18 N/A 1.561±0.00 3.150±1.92 N/A N/A N/A 0.243±0.00 19.854±0.00 6.879±0.00 13.189±0.00
ENST00000534733 N/A N/A N/A N/A N/A N/A N/A 2.350±0.00 N/A 1.415±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0001 VISTA 11:125757160-126360423

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003836 IEA beta-galactoside (CMP) alpha-2,3-sialyltransferase activity
GO:0005515 IEA protein binding
GO:0005794 IEA Golgi apparatus
GO:0005975 TAS carbohydrate metabolic process
GO:0006486 IEA protein glycosylation
GO:0008373 IEA sialyltransferase activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018146 TAS keratan sulfate biosynthetic process
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0030173 IEA integral component of Golgi membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0042339 TAS keratan sulfate metabolic process
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0047288 IEA monosialoganglioside sialyltransferase activity
GO:0050890 IMP cognition
GO:0070062 IDA extracellular vesicular exosome
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041006 st3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein_coding Danio_rerio
ENSMUSG00000032038 St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein_coding Mus_musculus

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