C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box helicase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110367 DDX6 9606 - 11:118747766-118791149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000525082 DDX6-003 118767627-118791136 retained_intron
  ENST00000526070 DDX6-002 118754589-118790948 protein_coding
  ENST00000529162 DDX6-004 118751365-118759369 retained_intron
  ENST00000531971 DDX6-006 118781120-118790359 retained_intron
  ENST00000533239 DDX6-005 118785833-118791149 retained_intron
  ENST00000534980 DDX6-001 118749325-118791136 protein_coding
  ENST00000617381 DDX6-201 118749887-118791147 protein_coding
  ENST00000620157 DDX6-202 118747766-118790948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000526070ENST00000534980ENST00000620157
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000526070 N/A N/A 2.511±0.00 6.493±0.00 6.923±0.00 N/A N/A N/A N/A N/A 2.863±0.00 N/A N/A
ENST00000534980 N/A N/A 4.865±0.00 9.096±0.00 10.758±0.00 11.347±0.00 6.284±0.00 N/A 14.682±0.00 14.774±0.00 3.468±0.00 9.150±0.00 N/A
ENST00000620157 4.269±0.00 12.902±0.00 1.904±0.00 N/A N/A 7.560±5.48 4.130±0.00 10.004±0.00 4.096±0.00 13.419±0.00 N/A 6.842±2.48 12.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BV CIL_0002BV_0002 CGP 11:118657316-118791149
CIL_00021W CIL_00021W_0002 CGP 11:118747766-118897799

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0003724 TAS RNA helicase activity
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0010467 TAS gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016442 IDA RISC complex
GO:0033962 IDA cytoplasmic mRNA processing body assembly
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061338 ddx6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 protein_coding Danio_rerio
ENSMUSG00000032097 Ddx6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 protein_coding Mus_musculus

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