C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: wingless-type MMTV integration site family, member 5B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111186 WNT5B 9606 + 12:1529891-1647243 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310594 WNT5B-005 1617056-1647211 protein_coding
  ENST00000397196 WNT5B-001 1629197-1647243 protein_coding
  ENST00000537031 WNT5B-007 1574657-1646367 protein_coding
  ENST00000538854 WNT5B-003 1616660-1631323 processed_transcript
  ENST00000539198 WNT5B-006 1529891-1639709 protein_coding
  ENST00000542408 WNT5B-009 1631315-1645933 protein_coding
  ENST00000543071 WNT5B-004 1630812-1645933 protein_coding
  ENST00000543563 WNT5B-002 1629897-1632906 processed_transcript
  ENST00000545747 WNT5B-010 1644797-1646533 processed_transcript
  ENST00000545811 WNT5B-008 1530819-1639827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310594ENST00000397196ENST00000538854ENST00000543071ENST00000545747
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310594 1.014±0.00 0.059±0.00 0.775±0.22 0.604±0.06 0.370±0.08 1.474±0.78 3.446±0.00 0.895±0.00 N/A 5.570±0.00 2.812±1.08 0.970±0.00
ENST00000397196 N/A N/A N/A 2.171±0.00 N/A N/A 0.166±0.00 N/A N/A 4.468±0.00 2.524±1.79 N/A
ENST00000538854 N/A N/A N/A N/A N/A N/A N/A 1.684±0.00 N/A N/A N/A N/A
ENST00000543071 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A
ENST00000545747 N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 2.305±0.00 4.045±0.00 0.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XK CIL_0003XK_0002 CGP 12:1529891-1647243

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002062 IEP chondrocyte differentiation
GO:0005102 IEA:IPI receptor binding
GO:0005109 IBA frizzled binding
GO:0005576 TAS:IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 NAS extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0009986 IEA cell surface
GO:0016055 IEA:IMP Wnt signaling pathway
GO:0030182 ISS neuron differentiation
GO:0030335 IDA positive regulation of cell migration
GO:0031012 IEA extracellular matrix
GO:0042060 IEA wound healing
GO:0045165 IBA cell fate commitment
GO:0045444 NAS fat cell differentiation
GO:0045600 IEA positive regulation of fat cell differentiation
GO:0070062 IDA extracellular vesicular exosome
GO:0070307 ISS lens fiber cell development
GO:0071300 ISS cellular response to retinoic acid
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034894 wnt5b wingless-type MMTV integration site family, member 5b protein_coding Danio_rerio
ENSMUSG00000030170 Wnt5b wingless-type MMTV integration site family, member 5B protein_coding Mus_musculus

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