C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: wingless-type MMTV integration site family, member 5B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030170 Wnt5b 10090 - 6:119432531-119544347 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117171 Wnt5b-002 119432531-119449386 protein_coding
  ENSMUST00000118120 Wnt5b-003 119432533-119467211 protein_coding
  ENSMUST00000119369 Wnt5b-001 119432534-119544318 protein_coding
  ENSMUST00000178696 Wnt5b-201 119432531-119544347 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117171ENSMUST00000118120ENSMUST00000119369ENSMUST00000178696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117171 0.134±0.00 1.242±0.34 N/A N/A N/A N/A N/A 0.374±0.00 0.038±0.01 0.338±0.11 N/A N/A N/A 1.132±0.00
ENSMUST00000118120 N/A 0.456±0.13 N/A N/A 1.702±0.00 N/A 0.214±0.03 2.240±0.45 1.761±1.24 N/A 0.313±0.19 1.779±0.75 0.722±0.52 1.095±0.00
ENSMUST00000119369 2.611±2.08 0.838±0.35 2.217±0.41 0.769±0.13 2.982±0.85 2.088±0.78 1.038±0.36 0.790±0.17 0.157±0.08 1.120±0.42 0.223±0.00 4.164±2.01 0.473±0.19 1.393±0.54
ENSMUST00000178696 1.010±0.00 0.965±0.54 1.242±0.16 1.300±0.00 1.578±0.51 1.902±0.51 N/A 0.603±0.16 0.212±0.00 0.960±0.10 N/A 2.504±1.46 N/A 1.362±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C2 CIL_0006C2_0002 CGP 6:119353150-119544347
CIL_0003XK CIL_0003XK_0003 CGP 6:119432531-119544347

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002062 IEA chondrocyte differentiation
GO:0005102 TAS receptor binding
GO:0005109 IBA frizzled binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IBA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0009887 TAS organ morphogenesis
GO:0009986 IDA cell surface
GO:0016055 IEA Wnt signaling pathway
GO:0030182 IBA neuron differentiation
GO:0030335 IEA positive regulation of cell migration
GO:0031012 IDA extracellular matrix
GO:0042060 IEA wound healing
GO:0045165 IBA cell fate commitment
GO:0045600 IGI positive regulation of fat cell differentiation
GO:0070062 IEA extracellular vesicular exosome
GO:0090090 IGI negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034894 wnt5b wingless-type MMTV integration site family, member 5b protein_coding Danio_rerio
ENSG00000111186 WNT5B wingless-type MMTV integration site family, member 5B protein_coding Homo_sapiens

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