C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111262 KCNA1 9606 + 12:4909905-4931361 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382545 KCNA1-001 4909905-4918247 protein_coding
  ENST00000541095 KCNA1-002 4910368-4931361 processed_transcript
  ENST00000543874 KCNA1-003 4910377-4918256 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382545ENST00000541095ENST00000543874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382545 0.009±0.00 0.035±0.00 0.006±0.00 4.650±3.27 0.103±0.01 0.362±0.15 0.009±0.00 0.014±0.00 0.200±0.00 0.044±0.03 0.024±0.00 0.035±0.00 0.010±0.00 0.033±0.02
ENST00000541095 N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543874 0.146±0.00 N/A N/A N/A N/A 1.403±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005267 TAS potassium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0009986 IEA cell surface
GO:0015079 TAS potassium ion transmembrane transporter activity
GO:0016020 IEA membrane
GO:0016324 IEA apical plasma membrane
GO:0030425 IEA dendrite
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0044224 ISS juxtaparanode region of axon
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017108 KCNA1A Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000062942 kcna1 potassium voltage-gated channel, shaker-related subfamily, member 1 protein_coding Danio_rerio
ENSMUSG00000047976 Kcna1 potassium voltage-gated channel, shaker-related subfamily, member 1 protein_coding Mus_musculus

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