C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382545 KCNA1-001 ENSG00000111262 9606 + 12:4909905-4918247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382545
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382545 0.009±0.00 0.035±0.00 0.006±0.00 4.650±3.27 0.103±0.01 0.362±0.15 0.009±0.00 0.014±0.00 0.200±0.00 0.044±0.03 0.024±0.00 0.035±0.00 0.010±0.00 0.033±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005267 TAS potassium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0009986 IEA cell surface
GO:0015079 TAS potassium ion transmembrane transporter activity
GO:0016020 IEA membrane
GO:0016324 IEA apical plasma membrane
GO:0030425 IEA dendrite
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0044224 ISS juxtaparanode region of axon
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055168 Kcna1-201 protein_coding Mus_musculus 0 2817
ENSDART00000109628 KCNA3 (2 of 2)-201 protein_coding Danio_rerio 0 778
ENSDART00000131038 protein_coding Danio_rerio 0 773
ENSDART00000009653 KCNA1A-201 protein_coding Danio_rerio 0 773
ENSMUST00000052718 Kcna3-201 protein_coding Mus_musculus 0 481
ENSMUST00000185333 Kcna6-201 protein_coding Mus_musculus 0 303
ENSMUST00000112242 Kcna6-003 protein_coding Mus_musculus 0 303
ENSMUST00000040751 Kcna6-001 nonsense_mediated_decay Mus_musculus 0 303

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