C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PARK2 co-regulated
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112530 PACRG 9606 + 6:162727132-163315492 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337019 PACRG-003 162727132-163315491 protein_coding
  ENST00000366888 PACRG-002 162727961-163315311 protein_coding
  ENST00000366889 PACRG-001 162727132-163315492 protein_coding
  ENST00000534958 PACRG-005 162814245-163179401 protein_coding
  ENST00000541974 PACRG-004 162814152-163315142 nonsense_mediated_decay
  ENST00000542669 PACRG-009 162727977-162892021 processed_transcript
  ENST00000542936 PACRG-007 163062286-163245168 protein_coding
  ENST00000544266 PACRG-008 162728000-162814335 retained_intron
  ENST00000545186 PACRG-006 163016209-163095429 processed_transcript
  ENST00000611387 PACRG-201 163312778-163314987 protein_coding
  ENST00000621363 PACRG-202 163060843-163090305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337019ENST00000366888ENST00000366889ENST00000534958ENST00000541974ENST00000542669ENST00000544266ENST00000611387ENST00000621363
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337019 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.877±0.00 N/A N/A
ENST00000366888 N/A 0.155±0.00 3.366±0.00 0.296±0.00 N/A 0.892±0.00 0.165±0.00 7.394±0.00 N/A 3.618±3.14 N/A 18.338±4.22
ENST00000366889 N/A N/A 1.219±0.00 0.185±0.00 N/A 0.633±0.00 0.089±0.00 0.339±0.00 0.143±0.00 0.217±0.15 N/A N/A
ENST00000534958 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541974 N/A N/A N/A N/A 0.235±0.00 0.286±0.00 0.134±0.00 N/A N/A N/A N/A N/A
ENST00000542669 0.153±0.00 N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A
ENST00000544266 N/A N/A 2.135±0.00 N/A N/A N/A N/A 2.776±0.00 N/A N/A N/A N/A
ENST00000611387 0.300±0.00 0.649±0.00 N/A N/A N/A 3.067±0.00 N/A N/A N/A N/A 0.476±0.00 N/A
ENST00000621363 N/A N/A N/A N/A N/A 2.761±0.00 0.681±0.00 N/A 2.356±0.00 N/A 0.183±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AN CIL_0009AN_0001 VISTA 6:162555798-163158898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001664 IPI G-protein coupled receptor binding
GO:0003779 IDA actin binding
GO:0005488 IEA binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0005829 IDA cytosol
GO:0005929 IEA cilium
GO:0007286 IEA spermatid development
GO:0030544 IPI Hsp70 protein binding
GO:0031072 IPI heat shock protein binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031982 IDA vesicle
GO:0034620 TAS cellular response to unfolded protein
GO:0043005 IDA neuron projection
GO:0043014 IDA alpha-tubulin binding
GO:0044297 IEA cell body
GO:0048487 IDA beta-tubulin binding
GO:0051087 IPI chaperone binding
GO:0051879 IDA Hsp90 protein binding
GO:0060548 IMP negative regulation of cell death
GO:0097225 IEA sperm midpiece

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004736 pacrg PARK2 co-regulated protein_coding Danio_rerio
ENSDARG00000087556 PACRG (2 of 2) PARK2 co-regulated protein_coding Danio_rerio
ENSMUSG00000037196 Pacrg PARK2 co-regulated protein_coding Mus_musculus

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