C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prefoldin subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113068 PFDN1 9606 - 5:140245039-140303121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261813 PFDN1-001 140245039-140303121 protein_coding
  ENST00000507185 PFDN1-004 140280960-140303086 retained_intron
  ENST00000510217 PFDN1-003 140245125-140303113 protein_coding
  ENST00000512707 PFDN1-005 140245347-140281535 retained_intron
  ENST00000512925 PFDN1-006 140245552-140293207 processed_transcript
  ENST00000514611 PFDN1-002 140245087-140300583 processed_transcript
  ENST00000524074 PFDN1-007 140245448-140303083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261813ENST00000507185ENST00000510217ENST00000512707ENST00000524074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261813 9.072±0.00 15.632±0.00 N/A 11.874±1.74 8.137±4.69 6.070±1.85 8.651±4.77 1.196±0.00 4.416±1.33 N/A 10.421±3.52 20.461±9.04 26.007±10.03 15.900±2.70
ENST00000507185 N/A N/A 2.671±0.00 N/A N/A N/A N/A 1.239±0.00 N/A N/A N/A N/A N/A N/A
ENST00000510217 11.804±0.00 10.556±0.00 N/A 9.305±0.00 N/A 13.375±0.00 17.205±0.00 0.944±0.00 N/A N/A N/A N/A 14.536±0.00 9.522±0.00
ENST00000512707 N/A 14.264±0.00 N/A 17.172±0.00 17.313±0.00 17.242±0.00 N/A N/A 7.513±0.00 N/A N/A 37.706±0.00 55.955±0.00 23.853±6.31
ENST00000524074 N/A N/A 10.931±0.00 25.030±1.28 9.418±0.00 N/A 6.828±0.00 4.461±0.00 7.494±0.00 12.774±0.00 N/A 29.353±0.00 44.124±0.00 15.205±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZM CIL_0006ZM_0001 CGP 5:140174642-140303121
CIL_00062T CIL_00062T_0002 CGP 5:140245039-140346631

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006457 TAS:IEA protein folding
GO:0007049 TAS cell cycle
GO:0016272 IEA prefoldin complex
GO:0021537 IEA telencephalon development
GO:0021549 IEA cerebellum development
GO:0030036 IEA actin cytoskeleton organization
GO:0042113 IEA B cell activation
GO:0044267 TAS cellular protein metabolic process
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014536 pfdn1 prefoldin subunit 1 protein_coding Danio_rerio
ENSMUSG00000024346 Pfdn1 prefoldin 1 protein_coding Mus_musculus

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