C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 4 (proto-oncogene)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114316 USP4 9606 - 3:49277831-49340712 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265560 USP4-002 49278106-49340071 protein_coding
  ENST00000351842 USP4-001 49277831-49340033 protein_coding
  ENST00000415188 USP4-011 49316732-49340036 protein_coding
  ENST00000416417 USP4-005 49311785-49340036 protein_coding
  ENST00000431357 USP4-004 49278170-49311618 protein_coding
  ENST00000461553 USP4-009 49305778-49314044 processed_transcript
  ENST00000462673 USP4-012 49317119-49318657 processed_transcript
  ENST00000464168 USP4-013 49324697-49340053 processed_transcript
  ENST00000475873 USP4-007 49284536-49293644 processed_transcript
  ENST00000483212 USP4-006 49278143-49279231 retained_intron
  ENST00000485450 USP4-003 49278158-49312863 retained_intron
  ENST00000486549 USP4-010 49297870-49340029 processed_transcript
  ENST00000488520 USP4-008 49300595-49318774 processed_transcript
  ENST00000491791 USP4-014 49324704-49340712 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265560ENST00000351842ENST00000416417ENST00000431357ENST00000464168ENST00000483212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265560 6.120±0.00 N/A 0.552±0.00 2.245±0.32 2.373±1.13 2.521±1.06 2.830±1.97 2.567±0.00 1.131±0.05 4.496±0.00 3.221±0.00 4.953±1.84 6.033±1.25 10.683±3.82
ENST00000351842 10.923±0.00 12.947±0.00 1.034±0.00 4.659±4.06 8.551±5.96 5.462±3.80 3.324±2.89 12.787±0.00 3.108±2.18 10.877±0.00 4.878±3.95 6.412±3.41 10.037±1.93 14.276±1.90
ENST00000416417 N/A N/A N/A N/A N/A 2.667±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431357 N/A N/A N/A 1.046±0.00 N/A 3.203±0.00 N/A 0.781±0.00 N/A N/A 1.390±0.00 N/A N/A N/A
ENST00000464168 N/A N/A N/A N/A N/A N/A N/A N/A 4.591±0.00 N/A 3.279±0.00 N/A N/A N/A
ENST00000483212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.425±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 IMP spliceosomal tri-snRNP complex assembly
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IDA:IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005764 TAS lysosome
GO:0005886 IDA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0031397 IMP negative regulation of protein ubiquitination
GO:0031647 IDA regulation of protein stability
GO:0031685 IPI adenosine receptor binding
GO:0034394 IDA protein localization to cell surface
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042802 IPI identical protein binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014770 usp4 ubiquitin specific protease 4 (proto-oncogene) protein_coding Danio_rerio
ENSMUSG00000032612 Usp4 ubiquitin specific peptidase 4 (proto-oncogene) protein_coding Mus_musculus

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