C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gamma-glutamyl carboxylase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115486 GGCX 9606 - 2:85544723-85561547 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233838 GGCX-001 85544723-85561509 protein_coding
  ENST00000421496 GGCX-009 85556182-85561493 nonsense_mediated_decay
  ENST00000423570 GGCX-002 85554844-85561473 nonsense_mediated_decay
  ENST00000428479 GGCX-005 85556218-85561493 nonsense_mediated_decay
  ENST00000430215 GGCX-007 85549830-85561532 protein_coding
  ENST00000465637 GGCX-006 85547620-85561493 processed_transcript
  ENST00000473665 GGCX-010 85552479-85554524 processed_transcript
  ENST00000481541 GGCX-004 85558584-85561493 processed_transcript
  ENST00000482662 GGCX-012 85552923-85553803 processed_transcript
  ENST00000496962 GGCX-003 85558725-85561547 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233838ENST00000430215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233838 2.875±0.00 4.865±0.00 2.801±0.00 1.390±0.00 6.596±3.68 4.977±0.00 4.098±0.00 9.226±2.87 3.454±0.00 3.957±1.33 2.592±1.24 5.022±1.83 7.414±0.67 6.615±1.50
ENST00000430215 N/A N/A N/A N/A N/A N/A N/A 16.519±0.00 42.022±0.00 N/A N/A N/A 11.749±2.52 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AX CIL_0009AX_0001 VISTA 2:84977509-85579132
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006464 TAS cellular protein modification process
GO:0007596 TAS blood coagulation
GO:0008488 IEA gamma-glutamyl carboxylase activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0017187 TAS:IEA peptidyl-glutamic acid carboxylation
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067805 ggcx gamma-glutamyl carboxylase protein_coding Danio_rerio
ENSMUSG00000053460 Ggcx gamma-glutamyl carboxylase protein_coding Mus_musculus

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