C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-glutamyl carboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233838 GGCX-001 ENSG00000115486 9606 - 2:85544723-85561509 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233838 2.875±0.00 4.865±0.00 2.801±0.00 1.390±0.00 6.596±3.68 4.977±0.00 4.098±0.00 9.226±2.87 3.454±0.00 3.957±1.33 2.592±1.24 5.022±1.83 7.414±0.67 6.615±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AX CIL_0009AX_0001 VISTA 2:84977509-85579132
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006464 TAS cellular protein modification process
GO:0007596 TAS blood coagulation
GO:0008488 IEA gamma-glutamyl carboxylase activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0017187 TAS:IEA peptidyl-glutamic acid carboxylation
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065906 Ggcx-001 protein_coding Mus_musculus 0 2619
ENSMUST00000059472 Mat2a-201 protein_coding Mus_musculus 0 966
ENSDART00000099089 ggcx-201 protein_coding Danio_rerio 0 300
ENSDART00000097670 ggcx-001 protein_coding Danio_rerio 0 300
ENSMUST00000132995 Ggcx-002 processed_transcript Mus_musculus 0 246
ENSMUST00000030133 Nfx1-002 protein_coding Mus_musculus 0.00004 57

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