C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115902 SLC1A4 9606 + 2:64988477-65023865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000234256 SLC1A4-001 64989401-65023865 protein_coding
  ENST00000471551 SLC1A4-004 64988490-65018127 processed_transcript
  ENST00000480594 SLC1A4-002 64999448-65023863 retained_intron
  ENST00000493121 SLC1A4-003 64988477-65016554 processed_transcript
  ENST00000531327 SLC1A4-005 64988490-65021394 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000234256ENST00000471551ENST00000480594ENST00000531327
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000234256 2.286±0.00 2.870±0.00 14.520±7.40 2.918±1.41 2.144±0.85 1.523±0.98 1.998±0.00 2.701±1.46 1.492±0.34 6.734±4.25 10.249±5.33 5.333±1.94 6.746±2.72
ENST00000471551 N/A N/A N/A N/A N/A N/A 3.386±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480594 N/A N/A N/A 0.268±0.00 0.357±0.00 N/A 0.130±0.00 N/A N/A 0.275±0.00 N/A N/A N/A
ENST00000531327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.978±7.52 5.524±0.00 15.774±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005254 IDA chloride channel activity
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0005882 ISS intermediate filament
GO:0005886 TAS plasma membrane
GO:0005887 IC integral component of plasma membrane
GO:0006811 TAS ion transport
GO:0006821 IDA chloride transport
GO:0006835 IEA dicarboxylic acid transport
GO:0006865 TAS amino acid transport
GO:0006868 TAS glutamine transport
GO:0009986 IDA cell surface
GO:0015175 IEA neutral amino acid transmembrane transporter activity
GO:0015180 IDA L-alanine transmembrane transporter activity
GO:0015184 IDA L-cystine transmembrane transporter activity
GO:0015186 TAS L-glutamine transmembrane transporter activity
GO:0015193 IDA L-proline transmembrane transporter activity
GO:0015194 IDA L-serine transmembrane transporter activity
GO:0015195 IDA L-threonine transmembrane transporter activity
GO:0015808 IDA L-alanine transport
GO:0015811 IDA L-cystine transport
GO:0015824 IDA proline transport
GO:0015825 IDA L-serine transport
GO:0015826 IDA threonine transport
GO:0016020 IDA:IEA membrane
GO:0016021 NAS integral component of membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0030425 IEA dendrite
GO:0034589 IDA hydroxyproline transport
GO:0034590 IDA L-hydroxyproline transmembrane transporter activity
GO:0035249 NAS synaptic transmission, glutamatergic
GO:0035524 IDA proline transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0050890 IMP cognition
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1902476 IDA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000551 slc1a4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein_coding Danio_rerio
ENSMUSG00000020142 Slc1a4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein_coding Mus_musculus

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