C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: guanylate binding protein 1, interferon-inducible
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117228 GBP1 9606 - 1:89052319-89065360 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370473 GBP1-001 89052319-89065360 protein_coding
  ENST00000459831 GBP1-006 89058341-89059355 processed_transcript
  ENST00000468959 GBP1-009 89053437-89056059 processed_transcript
  ENST00000469194 GBP1-002 89062707-89065230 processed_transcript
  ENST00000479889 GBP1-004 89053362-89055377 processed_transcript
  ENST00000484970 GBP1-005 89053300-89055341 processed_transcript
  ENST00000493139 GBP1-008 89058990-89060277 processed_transcript
  ENST00000495131 GBP1-003 89055569-89056941 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370473ENST00000495131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370473 3.499±0.00 4.070±0.00 1.702±0.00 1.183±0.52 5.785±1.04 3.354±0.78 1.382±0.65 2.426±0.47 3.122±0.67 10.138±3.34 0.961±0.75 6.134±3.45 10.562±1.49 2.152±0.79
ENST00000495131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.080±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0003 CGP 1:89006666-89065360
CIL_000033 CIL_000033_0004 CGP 1:89052319-89150456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005576 IEA extracellular region
GO:0005794 IEA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006184 IEA GTP catabolic process
GO:0016020 IEA membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0042802 IPI identical protein binding
GO:0051607 IEA defense response to virus
GO:0060333 TAS interferon-gamma-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005627 CABZ01068209.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000034063 CABZ01068208.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000038668 gbp1 guanylate binding protein 1 protein_coding Danio_rerio
ENSDARG00000038669 gbp2 guanylate binding protein 2 protein_coding Danio_rerio
ENSDARG00000067663 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio
ENSDARG00000068857 gbp4 guanylate binding protein 4 protein_coding Danio_rerio
ENSDARG00000074988 si:ch211-209n20.1 si:ch211-209n20.1 protein_coding Danio_rerio

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