C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 1, interferon-inducible
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370473 GBP1-001 ENSG00000117228 9606 - 1:89052319-89065360 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370473 3.499±0.00 4.070±0.00 1.702±0.00 1.183±0.52 5.785±1.04 3.354±0.78 1.382±0.65 2.426±0.47 3.122±0.67 10.138±3.34 0.961±0.75 6.134±3.45 10.562±1.49 2.152±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0003 CGP 1:89006666-89065360
CIL_000033 CIL_000033_0004 CGP 1:89052319-89150456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005576 IEA extracellular region
GO:0005794 IEA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006184 IEA GTP catabolic process
GO:0016020 IEA membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0042802 IPI identical protein binding
GO:0051607 IEA defense response to virus
GO:0060333 TAS interferon-gamma-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165774 Gbp2-001 protein_coding Mus_musculus 0 872
ENSMUST00000090127 Gbp5-201 protein_coding Mus_musculus 0 688
ENSMUST00000169572 Gbp2-002 nonsense_mediated_decay Mus_musculus 0 340

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