C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family D (ALD), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119688 ABCD4 9606 - 14:74285423-74303056 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356924 ABCD4-001 74285423-74303056 protein_coding
  ENST00000460308 ABCD4-004 74292322-74303055 nonsense_mediated_decay
  ENST00000465085 ABCD4-017 74286526-74288641 retained_intron
  ENST00000466822 ABCD4-013 74289301-74290499 retained_intron
  ENST00000469672 ABCD4-003 74290378-74302992 nonsense_mediated_decay
  ENST00000470637 ABCD4-009 74295879-74302959 nonsense_mediated_decay
  ENST00000474270 ABCD4-014 74286710-74292826 nonsense_mediated_decay
  ENST00000475240 ABCD4-008 74295730-74302934 retained_intron
  ENST00000477803 ABCD4-010 74297836-74302987 retained_intron
  ENST00000481348 ABCD4-012 74285996-74290452 nonsense_mediated_decay
  ENST00000481935 ABCD4-002 74286014-74302937 nonsense_mediated_decay
  ENST00000484380 ABCD4-016 74287811-74289953 retained_intron
  ENST00000489207 ABCD4-005 74299899-74302997 processed_transcript
  ENST00000489678 ABCD4-015 74294054-74298069 retained_intron
  ENST00000493427 ABCD4-007 74299061-74302995 retained_intron
  ENST00000493752 ABCD4-006 74299178-74302976 retained_intron
  ENST00000496015 ABCD4-011 74289079-74295914 retained_intron
  ENST00000553486 ABCD4-019 74286345-74302945 nonsense_mediated_decay
  ENST00000553745 ABCD4-018 74286570-74302969 nonsense_mediated_decay
  ENST00000553998 ABCD4-031 74292551-74295940 nonsense_mediated_decay
  ENST00000554453 ABCD4-029 74292748-74302918 nonsense_mediated_decay
  ENST00000555617 ABCD4-022 74292604-74302959 nonsense_mediated_decay
  ENST00000555904 ABCD4-028 74286284-74288768 protein_coding
  ENST00000556119 ABCD4-020 74292312-74302916 nonsense_mediated_decay
  ENST00000556517 ABCD4-026 74286397-74290452 protein_coding
  ENST00000556971 ABCD4-021 74292831-74302910 protein_coding
  ENST00000557554 ABCD4-024 74290347-74302997 processed_transcript
  ENST00000557588 ABCD4-023 74292775-74302987 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356924ENST00000474270ENST00000481348ENST00000481935ENST00000484380ENST00000489678ENST00000496015ENST00000553486ENST00000553745ENST00000555904ENST00000556517ENST00000556971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356924 N/A N/A N/A 0.735±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.487±0.00 N/A
ENST00000474270 N/A N/A 2.927±0.00 N/A N/A N/A N/A N/A 7.853±0.00 N/A 2.110±0.00 N/A N/A N/A
ENST00000481348 5.304±0.00 19.807±0.00 2.926±0.00 2.783±0.00 4.900±0.00 3.561±1.34 1.955±1.45 7.063±2.50 6.405±0.00 4.069±0.00 1.761±0.78 9.228±4.07 5.711±0.73 6.660±0.88
ENST00000481935 2.310±0.00 11.509±0.00 1.045±0.00 2.207±0.79 2.902±0.00 2.403±0.18 1.319±0.99 4.464±2.21 2.031±1.33 1.725±0.66 0.676±0.00 6.016±3.82 6.822±1.13 2.866±0.00
ENST00000484380 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.058±0.00 0.506±0.00 N/A N/A 3.199±0.00
ENST00000489678 N/A N/A 0.617±0.00 1.970±0.00 1.242±0.00 N/A 0.707±0.44 N/A 0.952±0.00 N/A N/A N/A N/A N/A
ENST00000496015 N/A N/A N/A 6.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553486 4.082±0.00 N/A 1.109±0.00 N/A 3.490±0.96 N/A N/A 4.471±0.00 1.049±0.00 1.703±0.00 0.574±0.00 7.348±6.00 6.783±2.60 8.574±0.00
ENST00000553745 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.734±0.00 N/A N/A N/A N/A
ENST00000555904 N/A N/A N/A N/A N/A N/A 0.935±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000556517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.576±0.00 N/A N/A N/A
ENST00000556971 N/A N/A N/A N/A N/A N/A N/A N/A 3.411±0.00 N/A 1.669±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000232 CIL_000232_0001 CGP 14:74239472-74303056
CIL_000231 CIL_000231_0001 CGP 14:74285423-74360008

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 NAS:IEA ATP binding
GO:0005777 IDA peroxisome
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0009235 IMP cobalamin metabolic process
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0042626 NAS:IEA ATPase activity, coupled to transmembrane movement of substances
GO:0043190 NAS ATP-binding cassette (ABC) transporter complex
GO:0055085 NAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061770 abcd4 ATP-binding cassette, sub-family D (ALD), member 4 protein_coding Danio_rerio
ENSMUSG00000021240 Abcd4 ATP-binding cassette, sub-family D (ALD), member 4 protein_coding Mus_musculus

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