C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000232_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119614-ENSG00000119688 CGP 9606 14:74239472-74303056
GeneTranscriptPositionBiotype
ENSG00000119614 (VSX2)
visual system homeobox 2 		ENST00000261980 (VSX2-001) 74239472-74262738 protein_coding
ENSG00000119688 (ABCD4)
ATP-binding cassette, sub-family D (ALD), member 4 		ENST00000356924 (ABCD4-001) 74285423-74303056 protein_coding
ENST00000460308 (ABCD4-004) 74292322-74303055 nonsense_mediated_decay
ENST00000465085 (ABCD4-017) 74286526-74288641 retained_intron
ENST00000466822 (ABCD4-013) 74289301-74290499 retained_intron
ENST00000469672 (ABCD4-003) 74290378-74302992 nonsense_mediated_decay
ENST00000470637 (ABCD4-009) 74295879-74302959 nonsense_mediated_decay
ENST00000474270 (ABCD4-014) 74286710-74292826 nonsense_mediated_decay
ENST00000475240 (ABCD4-008) 74295730-74302934 retained_intron
ENST00000477803 (ABCD4-010) 74297836-74302987 retained_intron
ENST00000481348 (ABCD4-012) 74285996-74290452 nonsense_mediated_decay
ENST00000481935 (ABCD4-002) 74286014-74302937 nonsense_mediated_decay
ENST00000484380 (ABCD4-016) 74287811-74289953 retained_intron
ENST00000489207 (ABCD4-005) 74299899-74302997 processed_transcript
ENST00000489678 (ABCD4-015) 74294054-74298069 retained_intron
ENST00000493427 (ABCD4-007) 74299061-74302995 retained_intron
ENST00000493752 (ABCD4-006) 74299178-74302976 retained_intron
ENST00000496015 (ABCD4-011) 74289079-74295914 retained_intron
ENST00000553486 (ABCD4-019) 74286345-74302945 nonsense_mediated_decay
ENST00000553745 (ABCD4-018) 74286570-74302969 nonsense_mediated_decay
ENST00000553998 (ABCD4-031) 74292551-74295940 nonsense_mediated_decay
ENST00000554453 (ABCD4-029) 74292748-74302918 nonsense_mediated_decay
ENST00000555617 (ABCD4-022) 74292604-74302959 nonsense_mediated_decay
ENST00000555904 (ABCD4-028) 74286284-74288768 protein_coding
ENST00000556119 (ABCD4-020) 74292312-74302916 nonsense_mediated_decay
ENST00000556517 (ABCD4-026) 74286397-74290452 protein_coding
ENST00000556971 (ABCD4-021) 74292831-74302910 protein_coding
ENST00000557554 (ABCD4-024) 74290347-74302997 processed_transcript
ENST00000557588 (ABCD4-023) 74292775-74302987 protein_coding
ENSG00000258559 (AC005519.4)
 ENST00000554532 (AC005519.4-001) 74289127-74294425 sense_overlapping
CIL_000232_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021239-ENSMUSG00000021240 CGP 10090 12:84569762-84617466
GeneTranscriptPositionBiotype
ENSMUSG00000021239 (Vsx2)
visual system homeobox 2 		ENSMUST00000021665 (Vsx2-001) 84569762-84595457 protein_coding
ENSMUST00000169934 (Vsx2-002) 84569840-84595457 protein_coding
ENSMUSG00000021240 (Abcd4)
ATP-binding cassette, sub-family D (ALD), member 4 		ENSMUST00000021666 (Abcd4-201) 84602531-84617466 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000232_0001ENSG00000119614ENST00000261980ENSG00000119688ENST00000356924ENST00000460308ENST00000465085ENST00000466822ENST00000469672ENST00000470637ENST00000474270ENST00000475240ENST00000477803ENST00000481348ENST00000481935ENST00000484380ENST00000489207ENST00000489678ENST00000493427ENST00000493752ENST00000496015ENST00000553486ENST00000553745ENST00000553998ENST00000554453ENST00000555617ENST00000555904ENST00000556119ENST00000556517ENST00000556971ENST00000557554ENST00000557588ENSG00000258559ENST00000554532CIL_000232_0002ENSMUSG00000021239ENSMUST00000021665ENSMUST00000169934ENSMUSG00000021240ENSMUST00000021666
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000232_0001ENSG00000119614ENST00000261980ENSG00000119688ENST00000356924ENST00000474270ENST00000481348ENST00000481935ENST00000484380ENST00000489678ENST00000496015ENST00000553486ENST00000553745ENST00000555904ENST00000556517ENST00000556971ENSG00000258559ENST00000554532CIL_000232_0002ENSMUSG00000021239ENSMUST00000021665ENSMUST00000169934ENSMUSG00000021240ENSMUST00000021666
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119614 ENST00000261980 0.077±0.00 0.037±0.00 N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.01
ENSG00000119688 ENST00000356924 N/A N/A N/A 0.735±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.487±0.00 N/A
ENST00000460308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474270 N/A N/A 2.927±0.00 N/A N/A N/A N/A N/A 7.853±0.00 N/A 2.110±0.00 N/A N/A N/A
ENST00000475240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481348 5.304±0.00 19.807±0.00 2.926±0.00 2.783±0.00 4.900±0.00 3.561±1.34 1.955±1.45 7.063±2.50 6.405±0.00 4.069±0.00 1.761±0.78 9.228±4.07 5.711±0.73 6.660±0.88
ENST00000481935 2.310±0.00 11.509±0.00 1.045±0.00 2.207±0.79 2.902±0.00 2.403±0.18 1.319±0.99 4.464±2.21 2.031±1.33 1.725±0.66 0.676±0.00 6.016±3.82 6.822±1.13 2.866±0.00
ENST00000484380 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.058±0.00 0.506±0.00 N/A N/A 3.199±0.00
ENST00000489207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489678 N/A N/A 0.617±0.00 1.970±0.00 1.242±0.00 N/A 0.707±0.44 N/A 0.952±0.00 N/A N/A N/A N/A N/A
ENST00000493427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496015 N/A N/A N/A 6.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553486 4.082±0.00 N/A 1.109±0.00 N/A 3.490±0.96 N/A N/A 4.471±0.00 1.049±0.00 1.703±0.00 0.574±0.00 7.348±6.00 6.783±2.60 8.574±0.00
ENST00000553745 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.734±0.00 N/A N/A N/A N/A
ENST00000553998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555904 N/A N/A N/A N/A N/A N/A 0.935±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000556119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.576±0.00 N/A N/A N/A
ENST00000556971 N/A N/A N/A N/A N/A N/A N/A N/A 3.411±0.00 N/A 1.669±0.00 N/A N/A N/A
ENST00000557554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258559 ENST00000554532 N/A N/A N/A 1.191±0.00 1.715±0.00 N/A N/A N/A 0.841±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021239 ENSMUST00000021665 N/A N/A 0.004±0.00 0.692±0.29 N/A N/A N/A N/A N/A 0.001±0.00 N/A 0.067±0.04 0.022±0.03 0.005±0.00
ENSMUST00000169934 0.015±0.00 N/A 0.010±0.00 0.348±0.38 0.011±0.00 N/A N/A 0.015±0.00 N/A 0.008±0.00 N/A 0.142±0.10 0.017±0.01 0.007±0.00
ENSMUSG00000021240 ENSMUST00000021666 4.713±1.75 7.036±3.19 8.727±3.04 2.323±0.19 4.041±2.04 4.298±1.76 2.391±0.91 18.126±2.28 2.866±0.91 4.092±0.72 2.015±0.25 3.014±1.27 12.705±5.75 0.309±0.17

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