C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121236 TRIM6 9606 + 11:5596109-5612958 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000278302 TRIM6-001 5596109-5612952 protein_coding
  ENST00000380097 TRIM6-003 5596656-5612952 protein_coding
  ENST00000380107 TRIM6-002 5596129-5612423 protein_coding
  ENST00000424369 TRIM6-007 5596110-5610190 protein_coding
  ENST00000445329 TRIM6-004 5596746-5612952 protein_coding
  ENST00000469187 TRIM6-005 5605172-5611279 retained_intron
  ENST00000481603 TRIM6-006 5605549-5612958 processed_transcript
  ENST00000506134 TRIM6-008 5596806-5611587 protein_coding
  ENST00000507320 TRIM6-011 5596113-5611700 protein_coding
  ENST00000511284 TRIM6-012 5596654-5611104 processed_transcript
  ENST00000515022 TRIM6-009 5596806-5611345 protein_coding
  ENST00000618326 TRIM6-201 5596746-5612951 protein_coding
  ENST00000621176 TRIM6-202 5603313-5612958 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278302ENST00000380097ENST00000380107ENST00000481603ENST00000506134ENST00000507320ENST00000515022ENST00000618326ENST00000621176
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278302 N/A N/A 0.158±0.00 N/A N/A 0.200±0.00 N/A 0.526±0.00 0.397±0.00 0.193±0.00 0.714±0.00 1.927±0.59 1.145±0.39
ENST00000380097 0.371±0.00 3.033±0.00 N/A 1.084±0.00 N/A N/A N/A N/A N/A N/A 0.873±0.19 N/A 2.386±1.23
ENST00000380107 N/A N/A 0.159±0.00 N/A N/A 0.064±0.00 N/A N/A N/A N/A 0.612±0.00 N/A N/A
ENST00000481603 N/A N/A N/A N/A N/A N/A 0.906±0.00 N/A N/A N/A N/A N/A 1.245±0.00
ENST00000506134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.040±0.00
ENST00000507320 N/A 4.649±0.00 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515022 N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A N/A 5.991±0.00
ENST00000618326 N/A 2.206±0.00 N/A 1.382±0.00 N/A N/A 1.150±0.00 N/A N/A N/A N/A N/A N/A
ENST00000621176 N/A N/A N/A 1.402±0.00 0.279±0.00 N/A 1.068±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R8 CIL_0003R8_0002 CGP 11:5248083-5645789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding
GO:0070206 IDA protein trimerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000072244 Trim6 tripartite motif-containing 6 protein_coding Mus_musculus

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