C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, Cu++ transporting, beta polypeptide
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123191 ATP7B 9606 - 13:51932673-52011494 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000242839 ATP7B-002 51932673-52011494 protein_coding
  ENST00000344297 ATP7B-201 51932674-52011494 protein_coding
  ENST00000400366 ATP7B-202 51932674-52011494 protein_coding
  ENST00000400370 ATP7B-203 51932673-52011494 protein_coding
  ENST00000418097 ATP7B-204 51932673-52011494 protein_coding
  ENST00000448424 ATP7B-205 51932673-52011494 protein_coding
  ENST00000466629 ATP7B-005 51944109-51946563 processed_transcript
  ENST00000482841 ATP7B-003 51941071-51974775 processed_transcript
  ENST00000483772 ATP7B-004 51964774-51973975 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000242839ENST00000344297ENST00000400366ENST00000400370ENST00000418097ENST00000448424ENST00000482841ENST00000483772
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000242839 0.740±0.00 N/A 0.100±0.00 0.265±0.00 0.150±0.00 0.381±0.00 0.159±0.00 1.772±0.00 0.448±0.00 N/A 1.436±1.23 2.851±0.99 2.989±0.00
ENST00000344297 N/A N/A 0.277±0.07 N/A N/A N/A 0.237±0.00 N/A N/A N/A 0.182±0.00 N/A N/A
ENST00000400366 N/A N/A 0.291±0.13 0.392±0.00 N/A 0.078±0.00 0.379±0.00 N/A N/A N/A 3.426±2.45 2.431±0.00 0.593±0.00
ENST00000400370 N/A 0.407±0.00 N/A N/A 0.136±0.00 N/A N/A 0.304±0.00 N/A N/A N/A 2.019±0.00 N/A
ENST00000418097 N/A N/A N/A N/A 0.741±0.00 N/A N/A N/A N/A 0.231±0.00 0.878±0.00 N/A N/A
ENST00000448424 N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A 0.385±0.00 N/A 0.449±0.16 N/A N/A
ENST00000482841 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A
ENST00000483772 N/A N/A N/A N/A N/A N/A N/A 0.967±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JJ CIL_0002JJ_0001 CGP 13:51861981-52011494
CIL_0000MJ CIL_0000MJ_0001 CGP 13:51932673-52029664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0000166 IEA nucleotide binding
GO:0004008 NAS copper-exporting ATPase activity
GO:0005507 IDA:IEA copper ion binding
GO:0005515 IPI protein binding
GO:0005524 IDA ATP binding
GO:0005739 IEA mitochondrion
GO:0005770 IDA late endosome
GO:0005802 IDA trans-Golgi network
GO:0005887 TAS integral component of plasma membrane
GO:0006812 IEA cation transport
GO:0006825 IGI copper ion transport
GO:0006878 TAS cellular copper ion homeostasis
GO:0006882 IEA cellular zinc ion homeostasis
GO:0007595 IEA lactation
GO:0008152 IEA metabolic process
GO:0015677 IDA copper ion import
GO:0015680 IEA intracellular copper ion transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016323 IDA basolateral plasma membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0030001 IEA metal ion transport
GO:0034220 TAS ion transmembrane transport
GO:0035434 IEA copper ion transmembrane transport
GO:0043682 IEA copper-transporting ATPase activity
GO:0046688 IDA response to copper ion
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051208 IDA sequestering of calcium ion
GO:0055085 TAS transmembrane transport
GO:0060003 IEA copper ion export
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000006567 Atp7b ATPase, Cu++ transporting, beta polypeptide protein_coding Mus_musculus

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