C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: basic leucine zipper transcription factor, ATF-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000123685 BATF3 9606 - 1:212686418-212699985 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243440 BATF3-001 212686418-212699985 protein_coding
  ENST00000471382 BATF3-003 212686418-212687509 processed_transcript
  ENST00000478275 BATF3-002 212686418-212698755 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243440ENST00000471382ENST00000478275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243440 1.913±0.00 4.815±0.00 N/A 1.341±1.19 0.294±0.00 2.615±0.00 0.687±0.00 1.107±0.74 N/A 2.793±2.66 0.706±0.00 1.476±0.43 3.128±0.49 0.938±0.32
ENST00000471382 N/A N/A N/A N/A 0.516±0.27 N/A N/A N/A 0.330±0.01 N/A 0.212±0.00 N/A 2.488±1.47 0.741±0.00
ENST00000478275 0.046±0.00 N/A 0.024±0.00 0.144±0.09 0.201±0.10 0.054±0.00 0.053±0.01 0.164±0.00 0.100±0.07 0.257±0.00 N/A 0.111±0.05 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JQ CIL_0008JQ_0001 VISTA 1:212231404-212833951
CIL_00012B CIL_00012B_0002 CGP 1:212686418-212791782

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0009615 ISS response to virus
GO:0043011 ISS myeloid dendritic cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0097028 ISS dendritic cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042577 batf3 basic leucine zipper transcription factor, ATF-like 3 protein_coding Danio_rerio
ENSMUSG00000026630 Batf3 basic leucine zipper transcription factor, ATF-like 3 protein_coding Mus_musculus

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