C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basic leucine zipper transcription factor, ATF-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243440 BATF3-001 ENSG00000123685 9606 - 1:212686418-212699985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000243440
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000243440 1.913±0.00 4.815±0.00 1.341±1.19 0.294±0.00 2.615±0.00 0.687±0.00 1.107±0.74 2.793±2.66 0.706±0.00 1.476±0.43 3.128±0.49 0.938±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JQ CIL_0008JQ_0001 VISTA 1:212231404-212833951
CIL_00012B CIL_00012B_0002 CGP 1:212686418-212791782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0009615 ISS response to virus
GO:0043011 ISS myeloid dendritic cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0097028 ISS dendritic cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027943 Batf3-201 protein_coding Mus_musculus 0 279

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