C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125743 SNRPD2 9606 - 19:45687454-45692569 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342669 SNRPD2-001 45687454-45692333 protein_coding
  ENST00000391932 SNRPD2-004 45687463-45691941 protein_coding
  ENST00000585392 SNRPD2-006 45687460-45691917 protein_coding
  ENST00000587367 SNRPD2-005 45687462-45691940 protein_coding
  ENST00000587579 SNRPD2-003 45692154-45692569 processed_transcript
  ENST00000588301 SNRPD2-002 45687463-45692316 protein_coding
  ENST00000588599 SNRPD2-007 45687463-45691771 protein_coding
  ENST00000590212 SNRPD2-008 45687511-45691917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342669ENST00000391932ENST00000585392ENST00000588301ENST00000590212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342669 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.868±0.00 N/A N/A N/A 10.585±0.00
ENST00000391932 N/A N/A 0.696±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585392 54.150±0.00 111.651±0.00 N/A N/A 48.871±0.00 106.416±0.00 37.046±0.00 45.277±41.69 66.489±0.00 140.733±0.00 86.042±0.00 132.481±51.00 105.405±3.28 56.844±6.20
ENST00000588301 67.662±0.00 76.333±0.00 1.421±0.00 63.714±50.78 36.678±27.45 62.179±52.21 9.146±3.68 27.244±19.51 9.839±0.00 16.880±14.58 1.400±0.00 91.801±89.32 52.080±13.99 71.573±65.03
ENST00000590212 27.004±0.00 43.717±0.00 N/A N/A 35.244±0.00 N/A 56.871±0.00 47.568±0.00 46.428±0.00 136.882±0.00 36.147±31.42 83.987±0.00 67.906±17.53 36.399±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0008380 IEA:TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 IEA:TAS small nuclear ribonucleoprotein complex
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040440 snrpd2 small nuclear ribonucleoprotein D2 polypeptide protein_coding Danio_rerio
ENSMUSG00000063166 Gm5449 predicted pseudogene 5449 protein_coding Mus_musculus

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