C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588301 SNRPD2-002 ENSG00000125743 9606 - 19:45687463-45692316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588301
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588301 67.662±0.00 76.333±0.00 1.421±0.00 63.714±50.78 36.678±27.45 62.179±52.21 9.146±3.68 27.244±19.51 9.839±0.00 16.880±14.58 1.400±0.00 91.801±89.32 52.080±13.99 71.573±65.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0008380 IEA:TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 IEA:TAS small nuclear ribonucleoprotein complex
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049294 Snrpd2-001 protein_coding Mus_musculus 0 503
ENSMUST00000081132 Gm5449-201 protein_coding Mus_musculus 0 460

Loading