C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: complement factor properdin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126759 CFP 9606 - X:47624213-47630305 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000247153 CFP-201 47624214-47630305 protein_coding
  ENST00000377005 CFP-002 47625988-47629965 protein_coding
  ENST00000396992 CFP-001 47624214-47629965 protein_coding
  ENST00000469388 CFP-006 47626807-47629895 protein_coding
  ENST00000478222 CFP-004 47624213-47626580 retained_intron
  ENST00000480317 CFP-005 47628122-47629952 processed_transcript
  ENST00000485991 CFP-003 47624559-47629895 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247153ENST00000377005ENST00000396992ENST00000469388ENST00000478222ENST00000485991
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A
ENST00000377005 3.575±0.00 1.010±0.00 N/A 0.154±0.00 N/A 0.349±0.00 N/A N/A N/A N/A N/A 0.569±0.00 N/A 0.767±0.00
ENST00000396992 N/A 1.591±0.00 N/A N/A 1.084±0.34 N/A 0.369±0.00 3.468±0.00 2.965±0.00 3.078±2.42 0.243±0.00 0.405±0.36 3.419±0.38 N/A
ENST00000469388 N/A N/A 0.081±0.00 N/A N/A N/A 0.187±0.08 N/A N/A N/A N/A 0.305±0.00 1.172±0.00 N/A
ENST00000478222 15.382±0.00 9.090±0.00 N/A N/A 3.178±0.00 1.807±0.00 0.435±0.00 4.356±0.00 7.342±0.00 7.079±0.00 N/A 1.223±0.86 2.401±0.82 1.472±0.00
ENST00000485991 N/A 0.550±0.00 N/A 0.026±0.00 N/A 0.355±0.00 0.036±0.00 0.207±0.04 0.352±0.00 0.065±0.00 N/A 0.116±0.13 0.075±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IH CIL_0006IH_0001 CGP X:47582313-47630305
CIL_000577 CIL_000577_0001 CGP X:47624213-47650604

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005615 TAS extracellular space
GO:0006955 TAS immune response
GO:0006956 TAS complement activation
GO:0006957 TAS complement activation, alternative pathway
GO:0030449 TAS regulation of complement activation
GO:0031012 IDA extracellular matrix
GO:0042742 TAS defense response to bacterium
GO:0045087 TAS innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078114 CFP (1 of 2) complement factor properdin protein_coding Danio_rerio
ENSDARG00000094451 cfp complement factor properdin protein_coding Danio_rerio
ENSMUSG00000001128 Cfp complement factor properdin protein_coding Mus_musculus

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