C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: L-3-hydroxyproline dehydratase (trans-)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126790 L3HYPDH 9606 - 14:59460363-59484430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000247194 L3HYPDH-003 59472617-59484430 protein_coding
  ENST00000463432 L3HYPDH-008 59472861-59476111 processed_transcript
  ENST00000466522 L3HYPDH-001 59460363-59475898 processed_transcript
  ENST00000478430 L3HYPDH-004 59472863-59474939 retained_intron
  ENST00000481608 L3HYPDH-007 59475869-59484006 protein_coding
  ENST00000487285 L3HYPDH-005 59474454-59483685 protein_coding
  ENST00000527981 L3HYPDH-009 59478726-59484408 retained_intron
  ENST00000532049 L3HYPDH-010 59472865-59475113 retained_intron
  ENST00000543619 L3HYPDH-011 59472971-59475208 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247194ENST00000478430ENST00000481608ENST00000487285
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247194 4.448±0.00 N/A N/A 8.245±0.00 N/A 3.488±0.00 N/A N/A 6.377±0.57 4.645±1.21 N/A
ENST00000478430 N/A N/A N/A N/A N/A N/A N/A N/A 10.111±0.00 N/A 32.611±0.00
ENST00000481608 N/A 7.020±0.00 10.289±0.00 7.013±0.00 6.342±0.00 7.698±0.00 7.133±0.00 N/A 15.407±2.11 6.710±0.00 N/A
ENST00000487285 N/A N/A N/A N/A N/A N/A N/A 2.494±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K2 CIL_0001K2_0001 CGP 14:59188646-59465342
CIL_0001K1 CIL_0001K1_0001 CGP 14:59429022-59484430
CIL_0005AS CIL_0005AS_0001 CGP 14:59460363-59505410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008152 IDA metabolic process
GO:0016836 IDA hydro-lyase activity
GO:0018112 IEA proline racemase activity
GO:0050346 IEA trans-L-3-hydroxyproline dehydratase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063020 CABZ01039235.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000019718 L3hypdh L-3-hydroxyproline dehydratase (trans-) protein_coding Mus_musculus

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