C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: L-3-hydroxyproline dehydratase (trans-)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019718 L3hypdh 10090 - 12:72073428-72085439 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019862 L3hypdh-001 72073428-72085439 protein_coding
  ENSMUST00000124405 L3hypdh-002 72076496-72085439 retained_intron
  ENSMUST00000138029 L3hypdh-003 72077264-72085018 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019862ENSMUST00000124405ENSMUST00000138029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019862 17.790±1.84 46.771±5.35 8.716±2.70 2.992±0.87 14.757±10.00 2.369±1.29 4.184±1.18 17.733±2.76 10.453±4.55 4.908±2.26 0.362±0.12 11.127±8.66 2.444±1.65 0.373±0.12
ENSMUST00000124405 N/A N/A N/A 0.465±0.30 N/A 0.748±0.00 N/A N/A N/A N/A 0.040±0.00 3.028±0.20 N/A 0.053±0.01
ENSMUST00000138029 N/A N/A N/A 1.932±1.22 N/A 1.411±0.15 1.290±0.00 6.027±0.00 4.476±0.52 N/A 0.260±0.00 6.261±0.00 1.066±0.47 0.325±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K1 CIL_0001K1_0002 CGP 12:72069618-72085439
CIL_0005AS CIL_0005AS_0002 CGP 12:72073428-72101461

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008152 IDA metabolic process
GO:0016836 IDA hydro-lyase activity
GO:0050346 IEA trans-L-3-hydroxyproline dehydratase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063020 CABZ01039235.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000126790 L3HYPDH L-3-hydroxyproline dehydratase (trans-) protein_coding Homo_sapiens

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