C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide N
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128739 SNRPN 9606 + 15:24823647-24978723 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000346403 SNRPN-007 24954935-24978583 protein_coding
  ENST00000390687 SNRPN-001 24954927-24978723 protein_coding
  ENST00000400097 SNRPN-004 24856551-24978582 protein_coding
  ENST00000400098 SNRPN-201 24823647-24978582 protein_coding
  ENST00000400100 SNRPN-003 24823647-24978582 protein_coding
  ENST00000553597 SNRPN-005 24856601-24974434 processed_transcript
  ENST00000554227 SNRPN-002 24954948-24978539 protein_coding
  ENST00000577565 SNRPN-008 24955005-24978548 protein_coding
  ENST00000579070 SNRPN-006 24955003-24977865 protein_coding
  ENST00000584968 SNRPN-009 24954935-24976327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346403ENST00000390687ENST00000400097ENST00000554227ENST00000577565ENST00000579070ENST00000584968
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346403 N/A 33.282±0.00 159.376±0.00 12.334±0.00 14.281±0.00 67.169±0.00 N/A 14.579±0.00 47.154±0.00 8.080±2.34 N/A N/A 48.417±0.00
ENST00000390687 3.679±0.00 N/A 143.718±0.00 4.056±0.00 5.810±0.00 34.656±3.58 15.025±12.58 N/A 5.073±0.00 N/A 65.518±65.76 15.558±1.17 N/A
ENST00000400097 N/A N/A N/A N/A 13.368±0.00 36.395±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000554227 N/A 15.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.582±0.00 N/A N/A
ENST00000577565 13.770±0.00 29.918±0.00 146.769±0.00 13.482±8.34 22.721±0.00 82.037±0.00 38.486±34.78 10.555±0.00 25.789±20.83 9.380±1.20 27.619±21.25 14.996±0.69 46.172±4.30
ENST00000579070 6.732±0.00 N/A 178.942±0.00 N/A 21.205±0.00 N/A 62.032±0.00 N/A N/A N/A N/A 6.434±0.00 16.158±0.00
ENST00000584968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.594±0.00 21.494±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 TAS spliceosomal complex
GO:0005685 IEA U1 snRNP
GO:0005686 IEA U2 snRNP
GO:0008380 TAS RNA splicing
GO:0009725 IEA response to hormone
GO:0030532 TAS small nuclear ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011125 snrpb small nuclear ribonucleoprotein polypeptides B and B1 protein_coding Danio_rerio

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