C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577565 SNRPN-008 ENSG00000128739 9606 + 15:24955005-24978548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000577565
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000577565 13.770±0.00 29.918±0.00 146.769±0.00 13.482±8.34 22.721±0.00 82.037±0.00 38.486±34.78 10.555±0.00 25.789±20.83 9.380±1.20 27.619±21.25 14.996±0.69 46.172±4.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 TAS spliceosomal complex
GO:0008380 TAS RNA splicing
GO:0030532 TAS small nuclear ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098402 Snrpn-202 protein_coding Mus_musculus 0 1090
ENSMUST00000059305 Snrpn-201 protein_coding Mus_musculus 0 1090
ENSMUST00000189432 Snrpn-001 nonsense_mediated_decay Mus_musculus 0 375
ENSMUST00000120366 Gm14881-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000179360 Snrpn-002 nonsense_mediated_decay Mus_musculus 0 289

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