C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 20-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129292 PHF20L1 9606 + 8:132775358-132848807 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000220847 PHF20L1-201 132775358-132845923 protein_coding
  ENST00000315808 PHF20L1-001 132775400-132825341 retained_intron
  ENST00000337920 PHF20L1-002 132775408-132812316 protein_coding
  ENST00000361997 PHF20L1-009 132775375-132818970 retained_intron
  ENST00000395374 PHF20L1-004 132803541-132813188 retained_intron
  ENST00000395376 PHF20L1-010 132775580-132812316 protein_coding
  ENST00000395379 PHF20L1-003 132775375-132811888 protein_coding
  ENST00000395383 PHF20L1-011 132775372-132825334 retained_intron
  ENST00000395386 PHF20L1-008 132775384-132848807 protein_coding
  ENST00000395390 PHF20L1-015 132777792-132848807 protein_coding
  ENST00000460236 PHF20L1-014 132817408-132847580 nonsense_mediated_decay
  ENST00000469979 PHF20L1-007 132806381-132825371 retained_intron
  ENST00000477051 PHF20L1-013 132841553-132847587 retained_intron
  ENST00000485595 PHF20L1-005 132775398-132799929 retained_intron
  ENST00000486199 PHF20L1-006 132777823-132825337 nonsense_mediated_decay
  ENST00000493126 PHF20L1-012 132836345-132837816 retained_intron
  ENST00000521038 PHF20L1-017 132799159-132811084 nonsense_mediated_decay
  ENST00000522253 PHF20L1-018 132816784-132824057 retained_intron
  ENST00000522580 PHF20L1-016 132777789-132798816 protein_coding
  ENST00000622263 PHF20L1-202 132775358-132845923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220847ENST00000315808ENST00000361997ENST00000395374ENST00000395383ENST00000395386ENST00000395390ENST00000460236ENST00000469979ENST00000485595ENST00000622263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220847 1.685±0.00 N/A 2.099±0.00 N/A N/A 3.668±0.00 2.269±0.81 1.344±0.00 3.790±0.00 4.457±0.00 1.841±0.00 3.460±1.35 3.371±0.00 4.058±0.00
ENST00000315808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.259±0.00 N/A
ENST00000361997 N/A N/A N/A 2.552±0.00 4.020±0.00 3.211±0.00 N/A N/A N/A N/A N/A 4.364±0.00 N/A N/A
ENST00000395374 N/A N/A N/A 4.218±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395383 N/A N/A N/A N/A 3.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395386 1.419±0.00 N/A N/A N/A 1.206±0.00 1.331±0.00 3.094±0.00 N/A 0.653±0.00 0.871±0.00 1.175±0.79 1.163±0.00 0.957±0.00 N/A
ENST00000395390 N/A 2.138±0.00 N/A 1.553±0.44 1.955±0.52 1.295±0.00 2.018±0.51 3.709±0.00 1.469±0.00 N/A 1.992±0.00 3.218±0.65 1.530±0.08 4.075±1.25
ENST00000460236 1.257±0.00 2.439±0.00 N/A 1.639±0.00 1.278±0.00 1.012±0.00 N/A 3.386±0.00 N/A N/A 0.516±0.00 2.704±0.00 1.852±0.00 3.781±0.00
ENST00000469979 N/A N/A N/A 1.522±0.00 2.308±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485595 N/A N/A 3.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622263 N/A N/A N/A N/A N/A N/A N/A 1.544±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PX CIL_0004PX_0001 CGP 8:132685007-132848807
CIL_0004PY CIL_0004PY_0001 CGP 8:132775358-133134903

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017427 phf20l1 PHD finger protein 20-like 1 protein_coding Danio_rerio
ENSMUSG00000072501 Phf20l1 PHD finger protein 20-like 1 protein_coding Mus_musculus

Loading