C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S4, Y-linked 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129824 RPS4Y1 9606 + Y:2841486-2932000 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250784 RPS4Y1-001 2841486-2867268 protein_coding
  ENST00000430575 RPS4Y1-002 2841920-2866862 protein_coding
  ENST00000477725 RPS4Y1-003 2854096-2866956 processed_transcript
  ENST00000515575 RPS4Y1-004 2854730-2932000 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000250784ENST00000430575ENST00000477725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000250784 N/A 16.208±0.00 2.089±0.00 8.975±0.00 N/A 6.114±0.00 4.009±1.87 5.809±0.00 14.511±0.00 5.636±4.87 0.844±0.14 9.103±9.06 19.916±0.00
ENST00000430575 N/A N/A N/A N/A 0.020±0.00 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000477725 0.140±0.00 15.944±0.00 1.232±0.00 N/A N/A N/A N/A 5.134±0.00 N/A N/A N/A 0.114±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS:IEA RNA binding
GO:0003735 IMP:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005844 IDA polysome
GO:0006412 IMP:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007275 IMP multicellular organismal development
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 NAS cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014690 rps4x ribosomal protein S4, X-linked protein_coding Danio_rerio

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