C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130332 LSM7 9606 - 19:2321517-2328620 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252622 LSM7-001 2321517-2328620 protein_coding
  ENST00000585395 LSM7-003 2321521-2328477 nonsense_mediated_decay
  ENST00000585409 LSM7-007 2321521-2328611 protein_coding
  ENST00000587502 LSM7-002 2321520-2328586 protein_coding
  ENST00000589532 LSM7-004 2321521-2324906 processed_transcript
  ENST00000591515 LSM7-005 2321521-2324532 retained_intron
  ENST00000591745 LSM7-006 2327962-2328587 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SY CIL_0001SY_0001 CGP 19:2289784-2328620
CIL_0001IB CIL_0001IB_0001 CGP 19:2321517-2354806

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017070 NAS U6 snRNA binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058328 lsm7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000035215 Lsm7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Mus_musculus
ENSMUSG00000064317 Gm10146 predicted gene 10146 protein_coding Mus_musculus

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