C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252622 LSM7-001 ENSG00000130332 9606 - 19:2321517-2328620 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SY CIL_0001SY_0001 CGP 19:2289784-2328620
CIL_0001IB CIL_0001IB_0001 CGP 19:2321517-2354806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017070 NAS U6 snRNA binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072739 Gm10146-201 protein_coding Mus_musculus 0 372
ENSMUST00000035775 Lsm7-201 protein_coding Mus_musculus 0 372
ENSMUST00000122241 Gm13182-001 processed_pseudogene Mus_musculus 0 350

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