C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 19 open reading frame 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131944 C19orf40 9606 + 19:32972209-32978222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254262 C19orf40-002 32972209-32976816 nonsense_mediated_decay
  ENST00000588258 C19orf40-001 32972250-32978222 protein_coding
  ENST00000589646 C19orf40-004 32972221-32976850 protein_coding
  ENST00000590179 C19orf40-003 32972260-32976974 protein_coding
  ENST00000590281 C19orf40-005 32972304-32976812 protein_coding
  ENST00000591791 C19orf40-006 32976986-32977933 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254262ENST00000588258ENST00000589646ENST00000590179ENST00000590281ENST00000591791
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254262 N/A N/A N/A 0.532±0.00 N/A N/A N/A 0.409±0.00 N/A N/A 1.096±0.11 0.869±0.35 4.608±0.00
ENST00000588258 0.466±0.00 1.521±0.00 0.278±0.24 0.364±0.00 0.354±0.00 0.158±0.12 0.719±0.00 0.242±0.00 0.255±0.17 0.164±0.00 0.857±0.00 0.231±0.00 1.948±0.79
ENST00000589646 N/A N/A N/A N/A 0.898±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590179 N/A 1.166±0.00 0.116±0.00 N/A 0.483±0.00 N/A 0.227±0.00 N/A N/A N/A 0.408±0.00 0.637±0.03 3.203±0.00
ENST00000590281 N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A 0.584±0.00 N/A N/A
ENST00000591791 0.640±0.00 0.670±0.00 0.251±0.00 0.106±0.00 0.362±0.00 N/A N/A 0.106±0.00 0.299±0.00 N/A 0.359±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 IEA DNA repair
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043240 IEA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051731 C25H19orf40 chromosome 19 open reading frame 40 protein_coding Danio_rerio
ENSMUSG00000030493 C230052I12Rik RIKEN cDNA C230052I12 gene protein_coding Mus_musculus

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