C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphatic vessel endothelial hyaluronan receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133800 LYVE1 9606 - 11:10556966-10611689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256178 LYVE1-001 10556966-10568691 protein_coding
  ENST00000438354 LYVE1-002 10558363-10568718 nonsense_mediated_decay
  ENST00000529598 LYVE1-003 10558877-10568577 protein_coding
  ENST00000531706 LYVE1-004 10559816-10611689 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256178ENST00000438354ENST00000529598ENST00000531706
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256178 20.235±0.00 8.181±0.00 0.422±0.00 0.552±0.08 4.687±1.15 4.074±0.00 2.874±1.82 2.029±0.32 4.231±0.55 6.365±2.89 1.101±0.82 1.661±1.43 17.095±4.26 1.035±0.57
ENST00000438354 33.365±0.00 14.134±0.00 0.808±0.00 0.874±0.09 4.697±3.02 2.499±0.00 1.018±0.00 3.285±0.03 5.578±0.31 8.274±4.19 2.247±0.00 3.033±3.32 63.443±21.62 2.339±0.00
ENST00000529598 N/A N/A 0.584±0.00 0.681±0.00 8.317±0.00 11.990±9.19 2.305±0.00 6.005±0.00 12.913±2.65 19.384±0.00 1.658±0.00 2.006±0.00 N/A N/A
ENST00000531706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.807±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J9 CIL_0004J9_0001 CGP 11:10511678-10611689
CIL_0004IK CIL_0004IK_0001 CGP 11:10556966-10693988

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005540 IEA hyaluronic acid binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006027 IEA glycosaminoglycan catabolic process
GO:0006810 IEA transport
GO:0006928 TAS cellular component movement
GO:0007155 IEA cell adhesion
GO:0007160 TAS cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0009611 TAS response to wounding
GO:0009653 TAS anatomical structure morphogenesis
GO:0016020 TAS membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030212 TAS hyaluronan metabolic process
GO:0030214 TAS hyaluronan catabolic process
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062483 lyve1b lymphatic vessel endothelial hyaluronic acid receptor 1b protein_coding Danio_rerio
ENSDARG00000075833 LYVE1 (2 of 2) lymphatic vessel endothelial hyaluronan receptor 1 protein_coding Danio_rerio
ENSMUSG00000030787 Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 protein_coding Mus_musculus

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