C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell adhesion molecule L1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134121 CHL1 9606 + 3:196596-409417 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256509 CHL1-001 196596-409417 protein_coding
  ENST00000397491 CHL1-002 196771-406852 protein_coding
  ENST00000421198 CHL1-007 197290-328259 protein_coding
  ENST00000427688 CHL1-006 196783-326064 protein_coding
  ENST00000435603 CHL1-008 198007-341946 protein_coding
  ENST00000445697 CHL1-013 389445-405739 protein_coding
  ENST00000449294 CHL1-010 217535-328223 protein_coding
  ENST00000453040 CHL1-003 197644-399148 nonsense_mediated_decay
  ENST00000461289 CHL1-014 319804-328458 processed_transcript
  ENST00000470005 CHL1-012 382186-384665 processed_transcript
  ENST00000470880 CHL1-011 373596-389340 processed_transcript
  ENST00000471332 CHL1-015 361698-363502 processed_transcript
  ENST00000481167 CHL1-005 196771-246856 processed_transcript
  ENST00000486881 CHL1-009 198014-213679 processed_transcript
  ENST00000489224 CHL1-004 197643-248601 processed_transcript
  ENST00000620033 CHL1-201 319683-409412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256509ENST00000397491ENST00000445697ENST00000620033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256509 0.699±0.00 0.313±0.00 N/A 16.874±4.47 0.609±0.12 4.623±0.00 0.432±0.00 N/A N/A 1.389±0.00 N/A 1.351±0.00 N/A 0.236±0.00
ENST00000397491 N/A N/A 1.583±0.00 10.513±0.00 N/A 0.745±0.00 0.093±0.00 N/A 0.907±0.00 0.489±0.00 N/A N/A N/A N/A
ENST00000445697 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.878±0.00 1.534±0.00 N/A N/A N/A
ENST00000620033 4.637±0.00 0.952±0.00 0.722±0.00 N/A 2.504±0.63 6.582±5.10 0.650±0.44 2.911±0.00 1.065±0.95 1.384±1.13 0.046±0.00 2.349±1.89 0.019±0.01 0.484±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0001 CGP 3:196596-1404217

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0002020 IEA protease binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007165 TAS signal transduction
GO:0007411 TAS axon guidance
GO:0008344 IEA adult locomotory behavior
GO:0016021 IEA integral component of membrane
GO:0030425 IEA dendrite
GO:0031103 IEA axon regeneration
GO:0031175 IEA neuron projection development
GO:0035640 IEA exploration behavior
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0045177 IEA apical part of cell
GO:0050890 IEA cognition
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076233 CHL1 (1 of 2) cell adhesion molecule L1-like protein_coding Danio_rerio
ENSDARG00000077881 chl1a cell adhesion molecule with homology to L1CAM (close homolog of L1) a protein_coding Danio_rerio
ENSMUSG00000030077 Chl1 cell adhesion molecule with homology to L1CAM protein_coding Mus_musculus

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