C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00050I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134121-ENSG00000134115 CGP 9606 3:196596-1404217
GeneTranscriptPositionBiotype
ENSG00000134115 (CNTN6)
contactin 6 		ENST00000350110 (CNTN6-004) 1092661-1403594 protein_coding
ENST00000394261 (CNTN6-003) 1093024-1298369 nonsense_mediated_decay
ENST00000397479 (CNTN6-002) 1092658-1403442 nonsense_mediated_decay
ENST00000413210 (CNTN6-005) 1092722-1147967 nonsense_mediated_decay
ENST00000446702 (CNTN6-001) 1092576-1404217 protein_coding
ENST00000485257 (CNTN6-006) 1401285-1402801 retained_intron
ENSG00000134121 (CHL1)
cell adhesion molecule L1-like 		ENST00000256509 (CHL1-001) 196596-409417 protein_coding
ENST00000397491 (CHL1-002) 196771-406852 protein_coding
ENST00000421198 (CHL1-007) 197290-328259 protein_coding
ENST00000427688 (CHL1-006) 196783-326064 protein_coding
ENST00000435603 (CHL1-008) 198007-341946 protein_coding
ENST00000445697 (CHL1-013) 389445-405739 protein_coding
ENST00000449294 (CHL1-010) 217535-328223 protein_coding
ENST00000453040 (CHL1-003) 197644-399148 nonsense_mediated_decay
ENST00000461289 (CHL1-014) 319804-328458 processed_transcript
ENST00000470005 (CHL1-012) 382186-384665 processed_transcript
ENST00000470880 (CHL1-011) 373596-389340 processed_transcript
ENST00000471332 (CHL1-015) 361698-363502 processed_transcript
ENST00000481167 (CHL1-005) 196771-246856 processed_transcript
ENST00000486881 (CHL1-009) 198014-213679 processed_transcript
ENST00000489224 (CHL1-004) 197643-248601 processed_transcript
ENST00000620033 (CHL1-201) 319683-409412 protein_coding
ENSG00000224239 (AC090044.2)
 ENST00000423193 (AC090044.2-001) 857124-858091 lincRNA
ENSG00000224957 (LINC01266)
long intergenic non-protein coding RNA 1266 		ENST00000420823 (LINC01266-001) 536231-846015 lincRNA
ENST00000442809 (LINC01266-002) 536253-842644 lincRNA
ENSG00000231660 (RPS8P6)
ribosomal protein S8 pseudogene 6 		ENST00000426177 (RPS8P6-001) 308714-309322 processed_pseudogene
ENSG00000232563 (CRB3P1)
crumbs family member 3 pseudogene 1 		ENST00000449338 (CRB3P1-001) 1394173-1394448 processed_pseudogene
ENSG00000235158 (AC087430.1)
 ENST00000451707 (AC087430.1-001) 1008135-1012934 lincRNA
ENSG00000238075 (RPSAP32)
ribosomal protein SA pseudogene 32 		ENST00000432681 (RPSAP32-001) 617789-618314 processed_pseudogene
ENSG00000244169 (RN7SL120P)
RNA, 7SL, cytoplasmic 120, pseudogene 		ENST00000463924 (RN7SL120P-201) 1065580-1065875 misc_RNA
CIL_00050I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030077-ENSMUSG00000030092 CGP 10090 6:103510876-104863406
GeneTranscriptPositionBiotype
ENSMUSG00000030077 (Chl1)
cell adhesion molecule with homology to L1CAM 		ENSMUST00000066905 (Chl1-201) 103510876-103733035 protein_coding
ENSMUSG00000030092 (Cntn6)
contactin 6 		ENSMUST00000089215 (Cntn6-001) 104492922-104863406 protein_coding
ENSMUST00000161070 (Cntn6-003) 104492811-104863248 protein_coding
ENSMUST00000161413 (Cntn6-002) 104493054-104571662 retained_intron
ENSMUST00000161446 (Cntn6-005) 104492790-104642949 protein_coding
ENSMUST00000162872 (Cntn6-004) 104493248-104863401 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050I_0001ENSG00000134115ENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257ENSG00000134121ENST00000256509ENST00000397491ENST00000421198ENST00000427688ENST00000435603ENST00000445697ENST00000449294ENST00000453040ENST00000461289ENST00000470005ENST00000470880ENST00000471332ENST00000481167ENST00000486881ENST00000489224ENST00000620033ENSG00000224239ENST00000423193ENSG00000224957ENST00000420823ENST00000442809ENSG00000231660ENST00000426177ENSG00000232563ENST00000449338ENSG00000235158ENST00000451707ENSG00000238075ENST00000432681ENSG00000244169ENST00000463924CIL_00050I_0002ENSMUSG00000030077ENSMUST00000066905ENSMUSG00000030092ENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050I_0001ENSG00000134115ENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257ENSG00000134121ENST00000256509ENST00000397491ENST00000445697ENST00000620033ENSG00000224239ENST00000423193ENSG00000224957ENST00000420823ENST00000442809ENSG00000231660ENST00000426177ENSG00000232563ENST00000449338ENSG00000235158ENST00000451707ENSG00000238075ENST00000432681ENSG00000244169ENST00000463924CIL_00050I_0002ENSMUSG00000030077ENSMUST00000066905ENSMUSG00000030092ENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134115 ENST00000350110 N/A N/A N/A 0.437±0.07 0.100±0.00 N/A N/A N/A N/A 0.422±0.00 N/A 0.030±0.00 0.359±0.00 0.043±0.00
ENST00000394261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 0.089±0.00
ENST00000397479 N/A N/A N/A N/A 0.031±0.00 0.052±0.01 N/A N/A N/A 0.394±0.07 N/A 0.079±0.00 0.481±0.64 0.170±0.00
ENST00000413210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.359±0.00
ENST00000446702 N/A N/A N/A 0.510±0.00 N/A N/A N/A 0.028±0.00 N/A 0.249±0.00 N/A N/A 0.236±0.00 N/A
ENST00000485257 N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134121 ENST00000256509 0.699±0.00 0.313±0.00 N/A 16.874±4.47 0.609±0.12 4.623±0.00 0.432±0.00 N/A N/A 1.389±0.00 N/A 1.351±0.00 N/A 0.236±0.00
ENST00000397491 N/A N/A 1.583±0.00 10.513±0.00 N/A 0.745±0.00 0.093±0.00 N/A 0.907±0.00 0.489±0.00 N/A N/A N/A N/A
ENST00000421198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445697 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.878±0.00 1.534±0.00 N/A N/A N/A
ENST00000449294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620033 4.637±0.00 0.952±0.00 0.722±0.00 N/A 2.504±0.63 6.582±5.10 0.650±0.44 2.911±0.00 1.065±0.95 1.384±1.13 0.046±0.00 2.349±1.89 0.019±0.01 0.484±0.00
ENSG00000224239 ENST00000423193 N/A 0.155±0.00 1.853±0.00 0.344±0.00 0.124±0.00 N/A N/A 0.430±0.00 N/A 0.320±0.00 N/A 0.238±0.01 0.154±0.06 2.375±1.27
ENSG00000224957 ENST00000420823 0.009±0.00 0.050±0.00 0.521±0.00 0.112±0.04 0.127±0.12 0.066±0.00 0.004±0.00 0.046±0.00 0.175±0.16 0.132±0.07 N/A 0.017±0.00 0.029±0.01 0.074±0.03
ENST00000442809 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00
ENSG00000231660 ENST00000426177 N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232563 ENST00000449338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00
ENSG00000235158 ENST00000451707 0.010±0.00 0.034±0.00 0.014±0.00 0.016±0.00 0.050±0.00 0.041±0.03 0.006±0.00 0.043±0.00 N/A 0.002±0.00 0.002±0.00 0.006±0.00 N/A 0.040±0.02
ENSG00000238075 ENST00000432681 N/A N/A N/A N/A 1.278±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244169 ENST00000463924 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030077 ENSMUST00000066905 0.091±0.03 0.644±0.36 N/A 21.898±13.06 0.196±0.10 0.316±0.11 0.207±0.03 0.102±0.04 0.018±0.02 0.092±0.02 0.046±0.02 0.072±0.03 0.014±0.01 10.918±2.51
ENSMUSG00000030092 ENSMUST00000089215 N/A N/A 1.514±0.05 1.322±0.29 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.022±0.02 N/A
ENSMUST00000161070 N/A N/A N/A 0.337±0.08 N/A N/A 0.011±0.00 0.014±0.00 0.008±0.00 N/A 0.002±0.00 0.049±0.02 0.013±0.01 N/A
ENSMUST00000161413 N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161446 N/A N/A N/A N/A N/A N/A 0.086±0.02 0.063±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000162872 0.013±0.00 N/A N/A 0.966±0.61 0.025±0.00 0.070±0.03 N/A 0.012±0.00 0.017±0.00 0.064±0.00 0.011±0.01 0.065±0.04 0.019±0.01 1.555±0.18

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