C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00050I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134121-ENSG00000134115 CGP 9606 3:196596-1404217
GeneTranscriptPositionBiotype
ENSG00000134115 (CNTN6)
contactin 6 		ENST00000350110 (CNTN6-004) 1092661-1403594 protein_coding
ENST00000394261 (CNTN6-003) 1093024-1298369 nonsense_mediated_decay
ENST00000397479 (CNTN6-002) 1092658-1403442 nonsense_mediated_decay
ENST00000413210 (CNTN6-005) 1092722-1147967 nonsense_mediated_decay
ENST00000446702 (CNTN6-001) 1092576-1404217 protein_coding
ENST00000485257 (CNTN6-006) 1401285-1402801 retained_intron
ENSG00000134121 (CHL1)
cell adhesion molecule L1-like 		ENST00000256509 (CHL1-001) 196596-409417 protein_coding
ENST00000397491 (CHL1-002) 196771-406852 protein_coding
ENST00000421198 (CHL1-007) 197290-328259 protein_coding
ENST00000427688 (CHL1-006) 196783-326064 protein_coding
ENST00000435603 (CHL1-008) 198007-341946 protein_coding
ENST00000445697 (CHL1-013) 389445-405739 protein_coding
ENST00000449294 (CHL1-010) 217535-328223 protein_coding
ENST00000453040 (CHL1-003) 197644-399148 nonsense_mediated_decay
ENST00000461289 (CHL1-014) 319804-328458 processed_transcript
ENST00000470005 (CHL1-012) 382186-384665 processed_transcript
ENST00000470880 (CHL1-011) 373596-389340 processed_transcript
ENST00000471332 (CHL1-015) 361698-363502 processed_transcript
ENST00000481167 (CHL1-005) 196771-246856 processed_transcript
ENST00000486881 (CHL1-009) 198014-213679 processed_transcript
ENST00000489224 (CHL1-004) 197643-248601 processed_transcript
ENST00000620033 (CHL1-201) 319683-409412 protein_coding
ENSG00000224239 (AC090044.2)
 ENST00000423193 (AC090044.2-001) 857124-858091 lincRNA
ENSG00000224957 (LINC01266)
long intergenic non-protein coding RNA 1266 		ENST00000420823 (LINC01266-001) 536231-846015 lincRNA
ENST00000442809 (LINC01266-002) 536253-842644 lincRNA
ENSG00000231660 (RPS8P6)
ribosomal protein S8 pseudogene 6 		ENST00000426177 (RPS8P6-001) 308714-309322 processed_pseudogene
ENSG00000232563 (CRB3P1)
crumbs family member 3 pseudogene 1 		ENST00000449338 (CRB3P1-001) 1394173-1394448 processed_pseudogene
ENSG00000235158 (AC087430.1)
 ENST00000451707 (AC087430.1-001) 1008135-1012934 lincRNA
ENSG00000238075 (RPSAP32)
ribosomal protein SA pseudogene 32 		ENST00000432681 (RPSAP32-001) 617789-618314 processed_pseudogene
ENSG00000244169 (RN7SL120P)
RNA, 7SL, cytoplasmic 120, pseudogene 		ENST00000463924 (RN7SL120P-201) 1065580-1065875 misc_RNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00050I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030077-ENSMUSG00000030092 CGP 10090 6:103510876-104863406
GeneTranscriptPositionBiotype
ENSMUSG00000030077 (Chl1)
cell adhesion molecule with homology to L1CAM 		ENSMUST00000066905 (Chl1-201) 103510876-103733035 protein_coding
ENSMUSG00000030092 (Cntn6)
contactin 6 		ENSMUST00000089215 (Cntn6-001) 104492922-104863406 protein_coding
ENSMUST00000161070 (Cntn6-003) 104492811-104863248 protein_coding
ENSMUST00000161413 (Cntn6-002) 104493054-104571662 retained_intron
ENSMUST00000161446 (Cntn6-005) 104492790-104642949 protein_coding
ENSMUST00000162872 (Cntn6-004) 104493248-104863401 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050I_0001ENSG00000134115ENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257ENSG00000134121ENST00000256509ENST00000397491ENST00000421198ENST00000427688ENST00000435603ENST00000445697ENST00000449294ENST00000453040ENST00000461289ENST00000470005ENST00000470880ENST00000471332ENST00000481167ENST00000486881ENST00000489224ENST00000620033ENSG00000224239ENST00000423193ENSG00000224957ENST00000420823ENST00000442809ENSG00000231660ENST00000426177ENSG00000232563ENST00000449338ENSG00000235158ENST00000451707ENSG00000238075ENST00000432681ENSG00000244169ENST00000463924CIL_00050I_0002ENSMUSG00000030077ENSMUST00000066905ENSMUSG00000030092ENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050I_0001ENSG00000134115ENST00000350110ENST00000394261ENST00000397479ENST00000413210ENST00000446702ENST00000485257ENSG00000134121ENST00000256509ENST00000397491ENST00000445697ENST00000620033ENSG00000224239ENST00000423193ENSG00000224957ENST00000420823ENST00000442809ENSG00000231660ENST00000426177ENSG00000232563ENST00000449338ENSG00000235158ENST00000451707ENSG00000238075ENST00000432681ENSG00000244169ENST00000463924CIL_00050I_0002ENSMUSG00000030077ENSMUST00000066905ENSMUSG00000030092ENSMUST00000089215ENSMUST00000161070ENSMUST00000161413ENSMUST00000161446ENSMUST00000162872
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134115 ENST00000350110 N/A N/A N/A 0.437±0.07 0.100±0.00 N/A N/A N/A N/A 0.422±0.00 N/A 0.030±0.00 0.359±0.00 0.043±0.00
ENST00000394261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 0.089±0.00
ENST00000397479 N/A N/A N/A N/A 0.031±0.00 0.052±0.01 N/A N/A N/A 0.394±0.07 N/A 0.079±0.00 0.481±0.64 0.170±0.00
ENST00000413210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.359±0.00
ENST00000446702 N/A N/A N/A 0.510±0.00 N/A N/A N/A 0.028±0.00 N/A 0.249±0.00 N/A N/A 0.236±0.00 N/A
ENST00000485257 N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134121 ENST00000256509 0.699±0.00 0.313±0.00 N/A 16.874±4.47 0.609±0.12 4.623±0.00 0.432±0.00 N/A N/A 1.389±0.00 N/A 1.351±0.00 N/A 0.236±0.00
ENST00000397491 N/A N/A 1.583±0.00 10.513±0.00 N/A 0.745±0.00 0.093±0.00 N/A 0.907±0.00 0.489±0.00 N/A N/A N/A N/A
ENST00000421198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445697 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.878±0.00 1.534±0.00 N/A N/A N/A
ENST00000449294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620033 4.637±0.00 0.952±0.00 0.722±0.00 N/A 2.504±0.63 6.582±5.10 0.650±0.44 2.911±0.00 1.065±0.95 1.384±1.13 0.046±0.00 2.349±1.89 0.019±0.01 0.484±0.00
ENSG00000224239 ENST00000423193 N/A 0.155±0.00 1.853±0.00 0.344±0.00 0.124±0.00 N/A N/A 0.430±0.00 N/A 0.320±0.00 N/A 0.238±0.01 0.154±0.06 2.375±1.27
ENSG00000224957 ENST00000420823 0.009±0.00 0.050±0.00 0.521±0.00 0.112±0.04 0.127±0.12 0.066±0.00 0.004±0.00 0.046±0.00 0.175±0.16 0.132±0.07 N/A 0.017±0.00 0.029±0.01 0.074±0.03
ENST00000442809 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00
ENSG00000231660 ENST00000426177 N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232563 ENST00000449338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00
ENSG00000235158 ENST00000451707 0.010±0.00 0.034±0.00 0.014±0.00 0.016±0.00 0.050±0.00 0.041±0.03 0.006±0.00 0.043±0.00 N/A 0.002±0.00 0.002±0.00 0.006±0.00 N/A 0.040±0.02
ENSG00000238075 ENST00000432681 N/A N/A N/A N/A 1.278±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244169 ENST00000463924 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.478±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030077 ENSMUST00000066905 0.091±0.03 0.644±0.36 N/A 21.898±13.06 0.196±0.10 0.316±0.11 0.207±0.03 0.102±0.04 0.018±0.02 0.092±0.02 0.046±0.02 0.072±0.03 0.014±0.01 10.918±2.51
ENSMUSG00000030092 ENSMUST00000089215 N/A N/A 1.514±0.05 1.322±0.29 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A 0.022±0.02 N/A
ENSMUST00000161070 N/A N/A N/A 0.337±0.08 N/A N/A 0.011±0.00 0.014±0.00 0.008±0.00 N/A 0.002±0.00 0.049±0.02 0.013±0.01 N/A
ENSMUST00000161413 N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161446 N/A N/A N/A N/A N/A N/A 0.086±0.02 0.063±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000162872 0.013±0.00 N/A N/A 0.966±0.61 0.025±0.00 0.070±0.03 N/A 0.012±0.00 0.017±0.00 0.064±0.00 0.011±0.01 0.065±0.04 0.019±0.01 1.555±0.18

Loading