C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine dehydratase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135094 SDS 9606 - 12:113392445-113426301 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257549 SDS-001 113392445-113403888 protein_coding
  ENST00000546639 SDS-004 113398837-113403886 retained_intron
  ENST00000546785 SDS-003 113399255-113403887 retained_intron
  ENST00000547342 SDS-006 113398515-113426301 protein_coding
  ENST00000552280 SDS-005 113397255-113403886 protein_coding
  ENST00000553112 SDS-002 113396640-113403886 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257549ENST00000547342ENST00000552280ENST00000553112
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257549 0.302±0.00 0.042±0.00 3.456±2.78 0.336±0.00 0.074±0.00 0.107±0.06 49.251±49.00 49.300±48.88 2.526±1.88 N/A 1.798±0.93 2.095±1.03 0.045±0.00
ENST00000547342 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A 0.064±0.00
ENST00000552280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00
ENST00000553112 0.177±0.00 N/A N/A 0.623±0.00 0.275±0.04 N/A 0.355±0.00 N/A N/A 0.059±0.00 0.409±0.00 N/A 0.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000842 CIL_000842_0001 VISTA 12:113363390-113966000

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003941 IDA L-serine ammonia-lyase activity
GO:0004794 IEA L-threonine ammonia-lyase activity
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006094 IEA gluconeogenesis
GO:0006520 IEA cellular amino acid metabolic process
GO:0006565 IDA L-serine catabolic process
GO:0030170 IDA pyridoxal phosphate binding
GO:0042803 IDA protein homodimerization activity
GO:0042866 IDA pyruvate biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029597 Sds serine dehydratase protein_coding Mus_musculus

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