C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SP110 nuclear body protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135899 SP110 9606 - 2:230167293-230225729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258381 SP110-002 230168918-230219950 protein_coding
  ENST00000258382 SP110-001 230176475-230220112 protein_coding
  ENST00000358662 SP110-003 230168936-230219951 protein_coding
  ENST00000392048 SP110-004 230176473-230219973 protein_coding
  ENST00000409815 SP110-007 230212349-230219902 protein_coding
  ENST00000416610 SP110-006 230214962-230225729 protein_coding
  ENST00000455674 SP110-008 230212396-230219961 protein_coding
  ENST00000462232 SP110-009 230212416-230219989 processed_transcript
  ENST00000463022 SP110-013 230169128-230170915 retained_intron
  ENST00000477068 SP110-005 230167293-230173514 retained_intron
  ENST00000480916 SP110-015 230168918-230171616 processed_transcript
  ENST00000483067 SP110-014 230168932-230172312 retained_intron
  ENST00000486146 SP110-010 230202933-230212905 processed_transcript
  ENST00000489597 SP110-012 230177366-230178257 retained_intron
  ENST00000490880 SP110-011 230200468-230211547 retained_intron
  ENST00000540870 SP110-201 230176578-230221721 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258381ENST00000258382ENST00000358662ENST00000392048ENST00000462232ENST00000477068ENST00000483067ENST00000489597ENST00000540870
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258381 N/A N/A 1.584±0.00 N/A 1.277±0.00 N/A N/A N/A N/A N/A N/A N/A 3.134±0.00 N/A
ENST00000258382 N/A N/A 1.636±0.00 1.148±0.57 2.158±0.08 3.584±0.00 N/A 2.560±0.00 1.414±0.00 N/A N/A 3.851±0.82 4.488±2.23 1.480±0.00
ENST00000358662 N/A N/A N/A 0.298±0.00 N/A N/A N/A N/A 1.334±0.00 3.640±0.00 1.406±0.00 1.662±0.12 N/A N/A
ENST00000392048 5.926±0.00 22.502±0.00 N/A 1.811±0.00 3.806±0.00 6.030±0.00 0.941±0.38 N/A 1.676±0.00 5.614±0.30 N/A 4.182±2.04 3.927±0.72 4.894±0.00
ENST00000462232 N/A N/A N/A 2.027±0.00 N/A N/A N/A N/A 7.297±0.00 N/A N/A 6.639±0.00 N/A N/A
ENST00000477068 N/A 6.447±0.00 N/A N/A N/A 1.383±0.00 N/A N/A N/A 1.886±0.00 0.385±0.00 1.563±0.00 N/A 1.252±0.00
ENST00000483067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.980±0.00 N/A N/A N/A
ENST00000489597 N/A N/A N/A 1.943±0.00 N/A N/A N/A N/A N/A N/A N/A 7.400±0.73 15.682±0.00 7.364±0.00
ENST00000540870 N/A N/A N/A 1.837±0.00 N/A 4.299±0.00 1.724±0.00 1.628±0.00 N/A 6.392±0.00 N/A 1.655±0.00 4.352±1.37 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0003 CGP 2:230167293-230313215

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004871 TAS signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 TAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000070034 Sp110 Sp110 nuclear body protein protein_coding Mus_musculus
ENSMUSG00000079808 AC168977.1 protein_coding Mus_musculus
ENSMUSG00000094799 AC125149.3 protein_coding Mus_musculus
ENSMUSG00000094874 AC132444.3 protein_coding Mus_musculus
ENSMUSG00000095092 AC125149.4 protein_coding Mus_musculus
ENSMUSG00000095250 AC133103.4 protein_coding Mus_musculus
ENSMUSG00000095672 AC133103.5 protein_coding Mus_musculus

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