C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sp110 nuclear body protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070034 Sp110 10090 - 1:85576899-85598817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093508 Sp110-001 85576899-85598817 protein_coding
  ENSMUST00000128339 Sp110-004 85576899-85589191 retained_intron
  ENSMUST00000130727 Sp110-003 85597718-85598779 processed_transcript
  ENSMUST00000131950 Sp110-005 85576903-85598749 retained_intron
  ENSMUST00000143363 Sp110-002 85593444-85598779 processed_transcript
  ENSMUST00000150114 Sp110-008 85597213-85598779 processed_transcript
  ENSMUST00000151690 Sp110-006 85595831-85598779 processed_transcript
  ENSMUST00000152399 Sp110-007 85595453-85598779 processed_transcript
  ENSMUST00000186740 Sp110-009 85579357-85584278 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093508ENSMUST00000128339ENSMUST00000130727ENSMUST00000131950ENSMUST00000152399ENSMUST00000186740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093508 1.467±0.56 1.099±0.53 2.514±0.00 0.105±0.02 8.926±2.08 1.770±0.76 1.287±0.02 1.467±0.72 2.332±1.90 4.637±0.38 0.298±0.27 3.395±2.17 0.508±0.22 0.121±0.05
ENSMUST00000128339 0.981±0.04 0.403±0.12 8.773±4.10 0.074±0.00 2.638±0.55 N/A N/A 0.333±0.00 0.576±0.28 2.024±0.45 0.255±0.22 0.953±0.47 0.238±0.22 0.049±0.02
ENSMUST00000130727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.136±0.00
ENSMUST00000131950 1.721±0.34 0.567±0.06 2.583±0.00 0.068±0.05 4.238±0.79 0.743±0.26 1.325±0.46 0.828±0.28 0.813±0.48 2.094±0.31 0.567±0.28 1.832±1.09 0.341±0.22 0.043±0.02
ENSMUST00000152399 N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.541±0.00 0.246±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0008 CGP 1:85576899-85645037

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0009617 IDA response to bacterium
GO:0043065 IDA positive regulation of apoptotic process
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio
ENSG00000135899 SP110 SP110 nuclear body protein protein_coding Homo_sapiens

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