C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136319 TTC5 9606 - 14:20256558-20305994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258821 TTC5-001 20286228-20305994 protein_coding
  ENST00000383029 TTC5-002 20289131-20305941 nonsense_mediated_decay
  ENST00000553828 TTC5-005 20300809-20305960 protein_coding
  ENST00000554157 TTC5-004 20289131-20305948 retained_intron
  ENST00000554992 TTC5-008 20260584-20261614 processed_transcript
  ENST00000556592 TTC5-007 20256558-20287740 processed_transcript
  ENST00000557379 TTC5-006 20300337-20305953 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258821ENST00000383029ENST00000554157ENST00000557379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258821 0.827±0.00 1.156±0.00 N/A 1.289±0.56 1.866±0.58 1.277±0.00 0.467±0.09 0.981±0.51 0.362±0.00 1.256±0.61 0.426±0.00 1.287±0.35 0.930±0.23 1.191±0.05
ENST00000383029 1.098±0.00 1.574±0.00 1.942±0.00 2.050±0.18 1.203±0.00 1.839±0.00 0.953±0.49 3.292±0.00 0.879±0.00 1.552±0.06 1.131±0.34 2.156±0.39 2.637±0.21 7.461±0.96
ENST00000554157 N/A N/A 0.666±0.00 N/A 1.143±0.00 0.713±0.00 0.236±0.00 0.216±0.00 N/A N/A N/A N/A N/A N/A
ENST00000557379 N/A N/A 5.673±0.00 10.337±0.00 5.519±0.00 7.625±0.00 3.402±0.00 3.127±0.00 6.558±0.00 6.301±0.00 2.105±0.00 7.645±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Q8 CIL_0005Q8_0001 CGP 14:20242739-20305994
CIL_0001OC CIL_0001OC_0001 CGP 14:20256558-20333312

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013329 ttc5 tetratricopeptide repeat domain 5 protein_coding Danio_rerio
ENSMUSG00000006288 Ttc5 tetratricopeptide repeat domain 5 protein_coding Mus_musculus

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