C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium binding and coiled-coil domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136436 CALCOCO2 9606 + 17:48830988-48866522 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258947 CALCOCO2-001 48830988-48865245 protein_coding
  ENST00000372317 CALCOCO2-017 48831037-48842294 processed_transcript
  ENST00000416445 CALCOCO2-003 48831035-48863174 protein_coding
  ENST00000448105 CALCOCO2-008 48831034-48863453 protein_coding
  ENST00000502761 CALCOCO2-015 48841563-48851124 protein_coding
  ENST00000503463 CALCOCO2-009 48831018-48848562 retained_intron
  ENST00000505071 CALCOCO2-018 48831056-48849269 protein_coding
  ENST00000506971 CALCOCO2-024 48852340-48860360 retained_intron
  ENST00000507076 CALCOCO2-014 48831228-48848336 protein_coding
  ENST00000507306 CALCOCO2-025 48852961-48863221 protein_coding
  ENST00000508679 CALCOCO2-002 48831035-48863196 protein_coding
  ENST00000509014 CALCOCO2-019 48847724-48848455 retained_intron
  ENST00000509112 CALCOCO2-029 48851603-48853235 retained_intron
  ENST00000509415 CALCOCO2-010 48831035-48851133 protein_coding
  ENST00000509507 CALCOCO2-004 48831026-48863050 protein_coding
  ENST00000509784 CALCOCO2-026 48856101-48863125 nonsense_mediated_decay
  ENST00000510356 CALCOCO2-005 48831035-48842662 retained_intron
  ENST00000510997 CALCOCO2-027 48865085-48866522 processed_transcript
  ENST00000511697 CALCOCO2-012 48831045-48842534 processed_transcript
  ENST00000511816 CALCOCO2-023 48851207-48852645 retained_intron
  ENST00000513119 CALCOCO2-011 48831035-48856174 protein_coding
  ENST00000514006 CALCOCO2-022 48851101-48852858 retained_intron
  ENST00000514267 CALCOCO2-021 48850982-48851698 retained_intron
  ENST00000514962 CALCOCO2-020 48848209-48853035 retained_intron
  ENST00000570513 CALCOCO2-033 48831035-48848401 protein_coding
  ENST00000575461 CALCOCO2-030 48855803-48856267 retained_intron
  ENST00000575560 CALCOCO2-032 48831035-48848245 retained_intron
  ENST00000576582 CALCOCO2-031 48831043-48848443 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258947ENST00000416445ENST00000448105ENST00000502761ENST00000506971ENST00000507306ENST00000508679ENST00000509415ENST00000509507ENST00000513119ENST00000514962
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258947 22.746±0.00 6.704±0.00 3.035±0.00 4.821±2.36 9.782±4.55 12.430±6.76 16.629±11.85 12.262±6.15 7.063±0.68 12.385±6.86 11.173±6.30 14.914±6.16 6.140±1.29 15.766±0.00
ENST00000416445 N/A N/A N/A 1.972±0.00 N/A 4.792±0.00 N/A 8.733±0.00 5.755±0.00 N/A N/A N/A N/A N/A
ENST00000448105 17.002±0.00 7.309±0.00 N/A N/A 10.147±0.00 14.165±0.00 36.904±0.00 12.028±0.00 8.875±0.00 27.914±0.00 26.458±0.00 10.661±0.00 N/A N/A
ENST00000502761 N/A N/A N/A N/A N/A N/A 14.856±0.00 N/A N/A N/A 21.734±0.00 N/A N/A N/A
ENST00000506971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 113.746±0.00 59.230±0.00 123.005±0.00
ENST00000507306 N/A N/A 12.914±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508679 37.808±0.00 14.877±0.00 N/A 11.607±0.00 22.971±0.00 38.755±0.00 N/A 15.754±0.00 N/A N/A N/A 26.862±0.00 8.696±0.00 48.661±0.00
ENST00000509415 N/A N/A 21.753±0.00 10.526±0.00 23.040±0.00 30.590±0.00 N/A N/A 28.350±0.00 24.205±0.00 N/A 26.234±0.00 N/A N/A
ENST00000509507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.770±8.23
ENST00000513119 N/A N/A N/A N/A N/A N/A 4.805±0.00 N/A N/A N/A N/A 34.977±25.51 21.334±7.39 102.407±0.00
ENST00000514962 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.889±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0034341 IDA response to interferon-gamma
GO:0042803 IPI protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052515 calcoco2 calcium binding and coiled-coil domain 2 protein_coding Danio_rerio
ENSMUSG00000006056 Calcoco2 calcium binding and coiled-coil domain 2 protein_coding Mus_musculus

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