C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137501 SYTL2 9606 - 11:85694224-85811159 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316356 SYTL2-004 85694275-85811129 protein_coding
  ENST00000354566 SYTL2-010 85694275-85726468 processed_transcript
  ENST00000359152 SYTL2-201 85694224-85758069 protein_coding
  ENST00000389958 SYTL2-011 85694726-85719168 protein_coding
  ENST00000389959 SYTL2-009 85694291-85726468 processed_transcript
  ENST00000389960 SYTL2-202 85694224-85811159 protein_coding
  ENST00000438197 SYTL2-006 85733595-85757745 retained_intron
  ENST00000524452 SYTL2-001 85695195-85757725 protein_coding
  ENST00000524830 SYTL2-005 85757760-85811140 processed_transcript
  ENST00000524911 SYTL2-030 85709467-85718488 protein_coding
  ENST00000525423 SYTL2-008 85694288-85728028 processed_transcript
  ENST00000525692 SYTL2-028 85694996-85696494 retained_intron
  ENST00000525702 SYTL2-016 85694288-85715137 protein_coding
  ENST00000526999 SYTL2-029 85709347-85719377 protein_coding
  ENST00000527523 SYTL2-002 85695086-85811141 protein_coding
  ENST00000527794 SYTL2-018 85704858-85719228 protein_coding
  ENST00000528231 SYTL2-007 85694742-85758003 protein_coding
  ENST00000528566 SYTL2-023 85714479-85719168 processed_transcript
  ENST00000529534 SYTL2-019 85704992-85718420 protein_coding
  ENST00000529581 SYTL2-014 85694726-85719138 protein_coding
  ENST00000529662 SYTL2-026 85696183-85705255 retained_intron
  ENST00000530351 SYTL2-012 85694726-85724713 processed_transcript
  ENST00000530894 SYTL2-031 85709324-85719056 processed_transcript
  ENST00000531496 SYTL2-027 85694814-85700623 retained_intron
  ENST00000532221 SYTL2-025 85709448-85716661 protein_coding
  ENST00000532995 SYTL2-013 85694275-85719075 nonsense_mediated_decay
  ENST00000533057 SYTL2-020 85704857-85719082 protein_coding
  ENST00000533577 SYTL2-024 85714428-85719150 protein_coding
  ENST00000533892 SYTL2-015 85695035-85719098 protein_coding
  ENST00000534554 SYTL2-022 85714436-85719180 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316356ENST00000359152ENST00000389958ENST00000389960ENST00000438197ENST00000524452ENST00000524830ENST00000525423ENST00000525702ENST00000527794ENST00000528231ENST00000529662ENST00000531496ENST00000532995ENST00000533892
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316356 0.959±0.00 2.165±0.00 3.681±0.00 9.253±7.54 N/A 0.193±0.00 2.119±1.23 N/A 1.913±0.00 N/A 2.064±0.86 0.896±0.00 2.277±0.00
ENST00000359152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.713±0.00 N/A
ENST00000389958 N/A N/A 7.972±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000389960 0.846±0.00 1.471±0.00 N/A N/A N/A N/A N/A 1.647±0.00 N/A 0.246±0.00 1.452±0.39 0.955±0.13 1.329±0.02
ENST00000438197 N/A N/A N/A N/A N/A 0.190±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000524452 N/A N/A N/A 1.631±0.00 2.440±0.00 0.196±0.02 N/A N/A N/A 0.444±0.00 2.335±0.88 0.822±0.00 2.372±0.00
ENST00000524830 N/A N/A N/A N/A N/A 1.205±0.00 N/A N/A N/A N/A 25.689±0.00 N/A N/A
ENST00000525423 N/A N/A 2.367±0.00 N/A 0.704±0.00 N/A N/A N/A 0.706±0.00 N/A 1.679±0.00 0.299±0.00 N/A
ENST00000525702 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.440±0.00 N/A N/A N/A
ENST00000527794 N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A 1.200±0.00 N/A 4.536±0.40 N/A
ENST00000528231 N/A N/A 3.044±0.00 N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A N/A N/A
ENST00000529662 N/A N/A N/A N/A N/A N/A 4.208±0.00 N/A N/A N/A N/A N/A 4.299±0.00
ENST00000531496 N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A 1.728±0.00 N/A N/A N/A
ENST00000532995 N/A 1.981±0.00 3.992±0.00 1.639±0.00 N/A 0.197±0.00 N/A 0.151±0.00 3.078±0.00 N/A N/A N/A 1.684±0.00
ENST00000533892 1.490±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.190±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001786 IMP phosphatidylserine binding
GO:0005215 IEA transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005546 IMP phosphatidylinositol-4,5-bisphosphate binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IDA exocytosis
GO:0006904 IDA vesicle docking involved in exocytosis
GO:0008021 IEA synaptic vesicle
GO:0010923 IDA negative regulation of phosphatase activity
GO:0016020 ISS membrane
GO:0016192 ISS vesicle-mediated transport
GO:0017137 IEA Rab GTPase binding
GO:0019897 ISS extrinsic component of plasma membrane
GO:0019902 IDA phosphatase binding
GO:0042043 ISS neurexin family protein binding
GO:0042470 ISS melanosome
GO:0070257 IEA positive regulation of mucus secretion
GO:0070382 IDA exocytic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061956 SYTL2 (1 of 2) synaptotagmin-like 2 protein_coding Danio_rerio
ENSDARG00000075436 sytl2b synaptotagmin-like 2b protein_coding Danio_rerio
ENSMUSG00000030616 Sytl2 synaptotagmin-like 2 protein_coding Mus_musculus

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