C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GRINL1A complex locus 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137878 GCOM1 9606 + 15:57591908-57714745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380568 GCOM1-002 57592033-57714745 protein_coding
  ENST00000380569 GCOM1-001 57591908-57714745 protein_coding
  ENST00000460962 GCOM1-007 57592033-57714745 nonsense_mediated_decay
  ENST00000463717 GCOM1-005 57592033-57714745 nonsense_mediated_decay
  ENST00000468886 GCOM1-012 57592033-57706955 nonsense_mediated_decay
  ENST00000471563 GCOM1-010 57592033-57706955 nonsense_mediated_decay
  ENST00000477282 GCOM1-006 57592033-57714745 nonsense_mediated_decay
  ENST00000482814 GCOM1-004 57592033-57714745 nonsense_mediated_decay
  ENST00000484300 GCOM1-013 57680698-57714745 processed_transcript
  ENST00000488175 GCOM1-009 57592033-57706955 nonsense_mediated_decay
  ENST00000496101 GCOM1-011 57592033-57706955 nonsense_mediated_decay
  ENST00000496627 GCOM1-003 57592033-57714745 nonsense_mediated_decay
  ENST00000569945 GCOM1-014 57690364-57692698 retained_intron
  ENST00000587652 GCOM1-015 57592014-57714689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverLungENST00000380568ENST00000380569ENST00000496627
Transcript ID Bladder Liver Lung
ENST00000380568 N/A 8.522±0.00 2.998±0.00
ENST00000380569 0.787±0.00 N/A N/A
ENST00000496627 N/A N/A 2.902±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0030054 IEA cell junction
GO:0030864 ISS cortical actin cytoskeleton
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0031674 ISS I band
GO:0035556 ISS intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075017 polr2m polymerase (RNA) II (DNA directed) polypeptide M protein_coding Danio_rerio
ENSMUSG00000041361 Myzap myocardial zonula adherens protein protein_coding Mus_musculus
ENSMUSG00000092137 Gcom1 GRINL1A complex locus protein_coding Mus_musculus

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