C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137947 GTF2B 9606 - 1:88852932-88891944 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370500 GTF2B-001 88852932-88891618 protein_coding
  ENST00000418217 GTF2B-002 88857315-88891589 protein_coding
  ENST00000448623 GTF2B-003 88853224-88891496 protein_coding
  ENST00000471296 GTF2B-006 88863986-88888048 processed_transcript
  ENST00000471471 GTF2B-007 88864044-88891944 processed_transcript
  ENST00000486078 GTF2B-004 88860056-88891645 processed_transcript
  ENST00000494819 GTF2B-005 88857265-88891527 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370500ENST00000418217ENST00000448623ENST00000471296ENST00000486078ENST00000494819
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370500 7.188±0.00 6.679±0.00 2.162±0.00 10.805±1.59 7.381±0.63 7.050±1.05 3.294±1.47 9.068±2.47 7.307±0.25 10.104±3.46 3.590±0.45 9.398±5.59 9.518±3.81 8.040±5.10
ENST00000418217 N/A N/A N/A 3.862±0.00 4.740±0.00 3.606±0.00 2.141±0.00 4.605±0.00 3.251±0.00 8.212±0.00 N/A 5.842±0.00 N/A N/A
ENST00000448623 N/A N/A N/A 3.012±0.00 N/A 2.559±0.00 N/A N/A N/A N/A 1.137±0.00 4.096±0.00 10.010±0.00 4.071±0.00
ENST00000471296 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.572±0.00 N/A N/A N/A N/A
ENST00000486078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.340±0.00 2.590±0.00 N/A 3.783±0.00
ENST00000494819 N/A N/A 1.256±0.00 N/A 3.439±0.00 N/A N/A N/A N/A N/A N/A 1.725±0.22 N/A 1.450±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001047 IEA core promoter binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0017025 IEA TBP-class protein binding
GO:0046966 IPI thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019489 gtf2b general transcription factor IIB protein_coding Danio_rerio
ENSMUSG00000028271 Gtf2b general transcription factor IIB protein_coding Mus_musculus

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