C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138074 SLC5A6 9606 - 2:27199587-27212958 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310574 SLC5A6-001 27199587-27212286 protein_coding
  ENST00000401463 SLC5A6-006 27206894-27211793 protein_coding
  ENST00000408041 SLC5A6-003 27200436-27211752 protein_coding
  ENST00000412471 SLC5A6-004 27206026-27212030 protein_coding
  ENST00000414408 SLC5A6-005 27207415-27212262 protein_coding
  ENST00000426119 SLC5A6-007 27207304-27211888 protein_coding
  ENST00000428518 SLC5A6-012 27207475-27212522 protein_coding
  ENST00000430186 SLC5A6-011 27207535-27212777 protein_coding
  ENST00000432106 SLC5A6-009 27206937-27212950 protein_coding
  ENST00000442731 SLC5A6-010 27207570-27212958 protein_coding
  ENST00000445802 SLC5A6-008 27205407-27211938 nonsense_mediated_decay
  ENST00000461319 SLC5A6-017 27201102-27203303 processed_transcript
  ENST00000461757 SLC5A6-018 27199587-27203049 retained_intron
  ENST00000464538 SLC5A6-013 27205135-27206319 retained_intron
  ENST00000476319 SLC5A6-014 27201784-27205081 retained_intron
  ENST00000481751 SLC5A6-016 27201412-27203116 retained_intron
  ENST00000488743 SLC5A6-002 27199589-27212146 retained_intron
  ENST00000492069 SLC5A6-015 27201712-27204672 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverMuscleOvaryPlacentaTestisENST00000310574ENST00000408041ENST00000445802
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000310574 8.696±0.00 0.830±0.00 1.242±0.00 3.466±0.00 10.045±0.00 N/A 3.715±0.00 11.486±1.84 18.499±2.89 20.124±0.00
ENST00000408041 N/A N/A N/A N/A N/A 2.156±0.00 N/A N/A N/A N/A
ENST00000445802 N/A N/A N/A N/A N/A N/A N/A 9.004±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0001 CGP 2:27149004-27212958
CIL_0000EI CIL_0000EI_0001 CGP 2:27199587-27217178

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006768 TAS biotin metabolic process
GO:0006810 TAS:IEA transport
GO:0006814 IEA sodium ion transport
GO:0008523 IEA sodium-dependent multivitamin transmembrane transporter activity
GO:0012506 IEA vesicle membrane
GO:0015878 IEA biotin transport
GO:0015887 IEA pantothenate transmembrane transport
GO:0015939 TAS pantothenate metabolic process
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031526 IEA brush border membrane
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014599 slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 protein_coding Danio_rerio
ENSDARG00000042859 SLC5A6 (2 of 2) solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 protein_coding Danio_rerio
ENSMUSG00000006641 Slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 protein_coding Mus_musculus

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