C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: USO1 vesicle transport factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138768 USO1 9606 + 4:75724593-75814286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264904 USO1-007 75724598-75814286 protein_coding
  ENST00000508454 USO1-008 75805009-75806555 retained_intron
  ENST00000512893 USO1-009 75770123-75771138 retained_intron
  ENST00000514213 USO1-001 75724593-75814213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264904ENST00000514213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264904 N/A N/A N/A 1.524±0.23 2.272±0.00 2.987±0.00 9.309±1.90 N/A 4.695±0.00 2.488±0.83 31.269±15.36 3.237±0.87 2.541±0.97 3.952±0.00
ENST00000514213 15.297±0.00 4.568±0.00 5.861±0.00 8.100±1.10 14.544±2.43 14.518±7.94 5.216±3.76 12.401±9.12 13.489±4.83 8.169±1.60 34.428±0.00 11.971±5.55 9.373±0.94 22.854±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051O CIL_00051O_0003 CGP 4:75642782-75814286

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005783 IBA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005795 IBA Golgi stack
GO:0005829 IEA cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 IBA ER to Golgi vesicle-mediated transport
GO:0008565 IEA protein transporter activity
GO:0012507 IBA ER to Golgi transport vesicle membrane
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0044822 IDA poly(A) RNA binding
GO:0045056 IBA transcytosis
GO:0048211 IBA Golgi vesicle docking
GO:0048280 IEA vesicle fusion with Golgi apparatus
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061025 IBA membrane fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019581 uso1 USO1 homolog, vesicle docking protein (yeast) protein_coding Danio_rerio
ENSDARG00000087925 USO1 (2 of 2) USO1 vesicle transport factor protein_coding Danio_rerio
ENSMUSG00000029407 Uso1 USO1 vesicle docking factor protein_coding Mus_musculus

Loading