C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139926 FRMD6 9606 + 14:51489100-51730727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344768 FRMD6-002 51651947-51728936 protein_coding
  ENST00000356218 FRMD6-003 51489137-51730459 protein_coding
  ENST00000395718 FRMD6-001 51651858-51730727 protein_coding
  ENST00000553556 FRMD6-005 51717255-51728769 protein_coding
  ENST00000554167 FRMD6-013 51698113-51730430 protein_coding
  ENST00000554495 FRMD6-015 51704618-51712506 retained_intron
  ENST00000554745 FRMD6-011 51565227-51643738 processed_transcript
  ENST00000554778 FRMD6-012 51651980-51698227 protein_coding
  ENST00000555197 FRMD6-018 51712513-51720525 protein_coding
  ENST00000555703 FRMD6-006 51717255-51725795 protein_coding
  ENST00000555936 FRMD6-014 51697988-51708088 protein_coding
  ENST00000555952 FRMD6-008 51554660-51579297 processed_transcript
  ENST00000556137 FRMD6-007 51489100-51689745 processed_transcript
  ENST00000557001 FRMD6-010 51554683-51576080 processed_transcript
  ENST00000557103 FRMD6-009 51554669-51576205 processed_transcript
  ENST00000557183 FRMD6-016 51704639-51715479 processed_transcript
  ENST00000557405 FRMD6-017 51702548-51708344 protein_coding
  ENST00000557522 FRMD6-004 51713647-51730454 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344768ENST00000356218ENST00000395718ENST00000553556ENST00000554167ENST00000554495ENST00000554778ENST00000557522
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344768 1.801±0.00 N/A N/A N/A N/A 0.373±0.00 N/A N/A N/A 1.597±0.00 N/A 3.441±0.00 3.535±0.00
ENST00000356218 N/A N/A N/A N/A N/A N/A N/A 3.898±0.00 N/A N/A N/A N/A N/A
ENST00000395718 2.754±0.00 0.221±0.00 0.488±0.00 1.410±0.00 3.764±0.00 0.653±0.21 0.525±0.00 3.659±0.00 1.013±0.00 N/A 3.104±0.82 1.089±0.36 5.115±0.00
ENST00000553556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.598±0.00 N/A 16.115±0.00
ENST00000554167 N/A 0.637±0.00 N/A 1.206±0.00 1.284±0.00 0.256±0.00 0.854±0.00 N/A 2.167±0.00 0.636±0.14 1.392±0.00 6.671±0.00 4.337±0.00
ENST00000554495 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.541±0.00 N/A N/A N/A
ENST00000554778 N/A N/A N/A N/A N/A N/A 3.243±0.00 N/A N/A N/A N/A N/A N/A
ENST00000557522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.570±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069M CIL_00069M_0002 CGP 14:51240162-51730727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003383 IEA apical constriction
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0032970 IEA regulation of actin filament-based process
GO:0034613 IEA cellular protein localization
GO:0043296 IEA apical junction complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002332 frmd6 FERM domain containing 6 protein_coding Danio_rerio
ENSMUSG00000048285 Frmd6 FERM domain containing 6 protein_coding Mus_musculus

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