C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00069M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019487-ENSDARG00000002332 CGP 7955 13:37324992-37395059
GeneTranscriptPositionBiotype
ENSDARG00000002332 (frmd6)
FERM domain containing 6 		ENSDART00000024386 (frmd6-201) 37359952-37392735 protein_coding
ENSDART00000137328 (frmd6-002) 37382092-37387578 protein_coding
ENSDART00000138104 (frmd6-001) 37376407-37395059 protein_coding
ENSDARG00000019487 (tmx1)
thioredoxin-related transmembrane protein 1 		ENSDART00000026313 (tmx1-201) 37324992-37335182 protein_coding
CIL_00069M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139921-ENSG00000139926 CGP 9606 14:51240162-51730727
GeneTranscriptPositionBiotype
ENSG00000139921 (TMX1)
thioredoxin-related transmembrane protein 1 		ENST00000457354 (TMX1-001) 51240168-51257546 protein_coding
ENST00000555574 (TMX1-002) 51240162-51245851 retained_intron
ENST00000556683 (TMX1-003) 51240250-51255654 nonsense_mediated_decay
ENSG00000139926 (FRMD6)
FERM domain containing 6 		ENST00000344768 (FRMD6-002) 51651947-51728936 protein_coding
ENST00000356218 (FRMD6-003) 51489137-51730459 protein_coding
ENST00000395718 (FRMD6-001) 51651858-51730727 protein_coding
ENST00000553556 (FRMD6-005) 51717255-51728769 protein_coding
ENST00000554167 (FRMD6-013) 51698113-51730430 protein_coding
ENST00000554495 (FRMD6-015) 51704618-51712506 retained_intron
ENST00000554745 (FRMD6-011) 51565227-51643738 processed_transcript
ENST00000554778 (FRMD6-012) 51651980-51698227 protein_coding
ENST00000555197 (FRMD6-018) 51712513-51720525 protein_coding
ENST00000555703 (FRMD6-006) 51717255-51725795 protein_coding
ENST00000555936 (FRMD6-014) 51697988-51708088 protein_coding
ENST00000555952 (FRMD6-008) 51554660-51579297 processed_transcript
ENST00000556137 (FRMD6-007) 51489100-51689745 processed_transcript
ENST00000557001 (FRMD6-010) 51554683-51576080 processed_transcript
ENST00000557103 (FRMD6-009) 51554669-51576205 processed_transcript
ENST00000557183 (FRMD6-016) 51704639-51715479 processed_transcript
ENST00000557405 (FRMD6-017) 51702548-51708344 protein_coding
ENST00000557522 (FRMD6-004) 51713647-51730454 retained_intron
ENSG00000201376 (SNORA70)
Small nucleolar RNA SNORA70 		ENST00000364506 (SNORA70.1-202) 51244090-51244224 snoRNA
ENSG00000201820 (Y_RNA)
Y RNA 		ENST00000364950 (Y_RNA.1-499) 51253933-51254023 misc_RNA
ENSG00000207004 (RNU6-301P)
RNA, U6 small nuclear 301, pseudogene 		ENST00000384277 (RNU6-301P-201) 51724103-51724209 snRNA
ENSG00000251756 (RNA5SP385)
RNA, 5S ribosomal pseudogene 385 		ENST00000515947 (RNA5SP385-201) 51692752-51692861 rRNA
ENSG00000258479 (LINC00640)
long intergenic non-protein coding RNA 640 		ENST00000554409 (LINC00640-002) 51333541-51365529 lincRNA
ENST00000555801 (LINC00640-004) 51360718-51365545 lincRNA
ENST00000556479 (LINC00640-001) 51333393-51365557 lincRNA
ENST00000557295 (LINC00640-003) 51333542-51342967 lincRNA
ENSG00000258537 (FRMD6-AS2)
FRMD6 antisense RNA 2 		ENST00000556617 (FRMD6-AS2-001) 51454512-51599952 lincRNA
ENST00000557625 (FRMD6-AS2-002) 51546629-51599920 lincRNA
ENSG00000258808 (RP11-255G12.3)
 ENST00000556762 (RP11-255G12.3-001) 51392128-51397135 lincRNA
ENSG00000258893 (SETP2)
SET pseudogene 2 		ENST00000553886 (SETP2-001) 51436038-51436963 processed_pseudogene
ENSG00000258942 (RP11-255G12.2)
 ENST00000555649 (RP11-255G12.2-001) 51344914-51385603 lincRNA
ENSG00000258955 (LINC00519)
long intergenic non-protein coding RNA 519 		ENST00000557518 (LINC00519-001) 51304416-51328386 lincRNA
ENSG00000273888 (FRMD6-AS1)
FRMD6 antisense RNA 1 		ENST00000617151 (FRMD6-AS1-001) 51649516-51651744 antisense
ENSG00000277050 (RP11-102G14.1)
 ENST00000616999 (RP11-102G14.1-001) 51637348-51637947 antisense
CIL_00069M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021072-ENSMUSG00000048285 CGP 10090 12:70453095-70902232
GeneTranscriptPositionBiotype
ENSMUSG00000021072 (Tmx1)
thioredoxin-related transmembrane protein 1 		ENSMUST00000021471 (Tmx1-001) 70453095-70468040 protein_coding
ENSMUST00000160865 (Tmx1-003) 70459841-70460576 retained_intron
ENSMUST00000162277 (Tmx1-002) 70456038-70466253 nonsense_mediated_decay
ENSMUSG00000048285 (Frmd6)
FERM domain containing 6 		ENSMUST00000057859 (Frmd6-201) 70825514-70902232 protein_coding
ENSMUSG00000088068 (Gm24474)
predicted gene, 24474 		ENSMUST00000157443 (Gm24474-201) 70673646-70673746 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00069M_0001ENSDARG00000002332ENSDART00000024386ENSDART00000137328ENSDART00000138104ENSDARG00000019487ENSDART00000026313CIL_00069M_0002ENSG00000139921ENST00000457354ENST00000555574ENST00000556683ENSG00000139926ENST00000344768ENST00000356218ENST00000395718ENST00000553556ENST00000554167ENST00000554495ENST00000554745ENST00000554778ENST00000555197ENST00000555703ENST00000555936ENST00000555952ENST00000556137ENST00000557001ENST00000557103ENST00000557183ENST00000557405ENST00000557522ENSG00000201376ENST00000364506ENSG00000201820ENST00000364950ENSG00000207004ENST00000384277ENSG00000251756ENST00000515947ENSG00000258479ENST00000554409ENST00000555801ENST00000556479ENST00000557295ENSG00000258537ENST00000556617ENST00000557625ENSG00000258808ENST00000556762ENSG00000258893ENST00000553886ENSG00000258942ENST00000555649ENSG00000258955ENST00000557518ENSG00000273888ENST00000617151ENSG00000277050ENST00000616999CIL_00069M_0003ENSMUSG00000021072ENSMUST00000021471ENSMUST00000160865ENSMUST00000162277ENSMUSG00000048285ENSMUST00000057859ENSMUSG00000088068ENSMUST00000157443
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00069M_0001ENSDARG00000002332ENSDART00000024386ENSDART00000138104ENSDARG00000019487ENSDART00000026313CIL_00069M_0002ENSG00000139921ENST00000457354ENST00000555574ENST00000556683ENSG00000139926ENST00000344768ENST00000356218ENST00000395718ENST00000553556ENST00000554167ENST00000554495ENST00000554778ENST00000557522ENSG00000201376ENST00000364506ENSG00000201820ENST00000364950ENSG00000207004ENST00000384277ENSG00000251756ENST00000515947ENSG00000258479ENST00000554409ENST00000555801ENST00000556479ENST00000557295ENSG00000258537ENST00000556617ENST00000557625ENSG00000258808ENST00000556762ENSG00000258893ENST00000553886ENSG00000258942ENST00000555649ENSG00000258955ENST00000557518ENSG00000273888ENST00000617151ENSG00000277050ENST00000616999CIL_00069M_0003ENSMUSG00000021072ENSMUST00000021471ENSMUST00000162277ENSMUSG00000048285ENSMUST00000057859ENSMUSG00000088068ENSMUST00000157443
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002332 ENSDART00000024386 N/A N/A N/A N/A N/A N/A 1.039±0.00 1.207±0.00 0.396±0.00 N/A N/A N/A N/A N/A
ENSDART00000137328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138104 N/A N/A N/A 0.474±0.00 N/A N/A 0.812±0.00 2.493±0.09 N/A N/A 1.394±0.00 N/A N/A N/A
ENSDARG00000019487 ENSDART00000026313 N/A N/A N/A 6.512±4.78 N/A N/A 11.085±0.43 12.166±1.91 2.629±0.00 N/A 6.026±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139921 ENST00000457354 5.013±0.00 5.685±0.00 0.411±0.00 1.778±0.25 3.521±1.01 4.685±0.18 1.044±0.31 2.097±0.09 2.134±0.08 3.722±0.60 1.259±0.88 3.827±0.74 4.713±1.00 1.950±0.08
ENST00000555574 N/A N/A 0.868±0.00 N/A N/A N/A N/A N/A N/A N/A 1.032±0.00 N/A 9.686±0.00 N/A
ENST00000556683 10.650±0.00 5.701±0.00 0.996±0.00 3.769±0.31 7.279±1.00 5.872±0.10 1.861±0.67 4.510±0.00 4.839±2.83 5.478±1.34 0.577±0.18 3.568±1.86 5.839±5.06 5.792±0.00
ENSG00000139926 ENST00000344768 1.801±0.00 N/A N/A N/A N/A N/A 0.373±0.00 N/A N/A N/A 1.597±0.00 N/A 3.441±0.00 3.535±0.00
ENST00000356218 N/A N/A N/A N/A N/A N/A N/A N/A 3.898±0.00 N/A N/A N/A N/A N/A
ENST00000395718 2.754±0.00 N/A 0.221±0.00 0.488±0.00 1.410±0.00 3.764±0.00 0.653±0.21 0.525±0.00 3.659±0.00 1.013±0.00 N/A 3.104±0.82 1.089±0.36 5.115±0.00
ENST00000553556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.598±0.00 N/A 16.115±0.00
ENST00000554167 N/A N/A 0.637±0.00 N/A 1.206±0.00 1.284±0.00 0.256±0.00 0.854±0.00 N/A 2.167±0.00 0.636±0.14 1.392±0.00 6.671±0.00 4.337±0.00
ENST00000554495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.541±0.00 N/A N/A N/A
ENST00000554745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554778 N/A N/A N/A N/A N/A N/A N/A 3.243±0.00 N/A N/A N/A N/A N/A N/A
ENST00000555197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.570±0.00 N/A N/A
ENSG00000201376 ENST00000364506 0.289±0.00 0.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201820 ENST00000364950 0.233±0.00 N/A N/A N/A N/A 1.441±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207004 ENST00000384277 N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251756 ENST00000515947 N/A N/A N/A N/A 0.643±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258479 ENST00000554409 N/A N/A N/A 0.095±0.00 0.446±0.00 N/A N/A N/A N/A N/A N/A 0.100±0.03 N/A 0.299±0.00
ENST00000555801 N/A 0.117±0.00 N/A 0.122±0.00 0.147±0.00 N/A N/A N/A 0.561±0.00 N/A N/A N/A 0.173±0.02 0.311±0.00
ENST00000556479 N/A N/A N/A 0.117±0.00 N/A N/A 0.045±0.00 N/A N/A 0.116±0.00 N/A N/A N/A 0.249±0.00
ENST00000557295 N/A 0.198±0.00 N/A 0.167±0.00 N/A N/A N/A N/A 0.520±0.00 0.108±0.00 N/A 0.057±0.01 N/A 0.129±0.00
ENSG00000258537 ENST00000556617 N/A N/A N/A N/A N/A 0.361±0.00 N/A N/A N/A N/A N/A 0.693±0.08 N/A 0.131±0.00
ENST00000557625 N/A N/A N/A 0.182±0.12 N/A 0.241±0.14 N/A N/A N/A N/A N/A 0.603±0.20 0.093±0.00 0.039±0.02
ENSG00000258808 ENST00000556762 N/A 0.088±0.00 N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A 0.176±0.09 N/A 0.071±0.00
ENSG00000258893 ENST00000553886 N/A N/A 0.072±0.00 0.011±0.00 0.011±0.00 0.010±0.00 N/A 0.011±0.00 0.093±0.00 N/A 0.010±0.00 0.028±0.02 0.028±0.02 0.043±0.04
ENSG00000258942 ENST00000555649 N/A 0.226±0.00 N/A 0.018±0.00 0.104±0.00 N/A N/A N/A 0.145±0.00 N/A N/A 0.029±0.00 N/A 0.089±0.00
ENSG00000258955 ENST00000557518 0.046±0.00 0.596±0.00 N/A 0.026±0.00 0.205±0.00 0.047±0.00 0.068±0.00 0.249±0.00 0.043±0.00 0.118±0.00 N/A 0.226±0.23 0.094±0.03 0.473±0.03
ENSG00000273888 ENST00000617151 0.052±0.00 0.405±0.00 N/A 0.140±0.09 0.083±0.01 0.035±0.00 0.086±0.01 0.098±0.00 0.052±0.04 0.031±0.00 0.237±0.23 0.144±0.08 0.099±0.05 0.498±0.35
ENSG00000277050 ENST00000616999 0.032±0.00 0.388±0.00 N/A 0.235±0.15 0.371±0.00 N/A N/A N/A 0.426±0.41 N/A N/A 0.357±0.18 0.094±0.02 0.385±0.32
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021072 ENSMUST00000021471 5.556±1.37 8.527±0.60 12.974±1.13 14.165±6.56 5.592±1.37 7.427±0.57 11.472±0.87 8.513±1.55 17.684±11.03 8.200±0.76 4.178±0.60 11.975±5.23 20.719±8.63 8.783±2.66
ENSMUST00000160865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.094±0.00
ENSMUSG00000048285 ENSMUST00000057859 10.684±3.68 9.266±0.80 19.823±1.57 3.982±0.54 10.724±2.97 6.312±0.35 7.281±1.18 3.063±0.18 1.095±0.42 17.443±1.73 2.407±0.90 9.976±2.30 14.438±3.64 1.729±0.42
ENSMUSG00000088068 ENSMUST00000157443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7720.780±0.00 N/A N/A

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