C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glucosaminyl (N-acetyl) transferase 3, mucin type
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140297 GCNT3 9606 + 15:59594875-59640239 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000396065 GCNT3-001 59611784-59622723 protein_coding
  ENST00000558721 GCNT3-003 59594875-59618222 processed_transcript
  ENST00000559189 GCNT3-005 59599677-59618500 protein_coding
  ENST00000559200 GCNT3-010 59617939-59618697 protein_coding
  ENST00000559626 GCNT3-007 59616434-59618398 protein_coding
  ENST00000560111 GCNT3-006 59599653-59611676 processed_transcript
  ENST00000560210 GCNT3-009 59616531-59640239 processed_transcript
  ENST00000560580 GCNT3-004 59599643-59616809 processed_transcript
  ENST00000560585 GCNT3-008 59611784-59620008 protein_coding
  ENST00000560874 GCNT3-002 59595729-59616739 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396065ENST00000558721ENST00000559200ENST00000559626ENST00000560210ENST00000560585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396065 0.085±0.00 0.206±0.00 N/A 0.136±0.00 0.761±0.66 4.230±0.00 0.103±0.00 N/A 0.059±0.00 0.111±0.00 0.014±0.00 0.320±0.06 0.061±0.00 0.231±0.00
ENST00000558721 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559200 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.675±0.00 N/A N/A N/A N/A
ENST00000559626 N/A N/A 0.775±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560210 N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560585 N/A N/A 0.152±0.00 N/A 2.052±0.00 7.754±5.46 N/A 2.616±2.53 0.031±0.00 1.072±0.00 0.020±0.00 1.023±0.66 0.186±0.13 2.338±1.63

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002426 IEA immunoglobulin production in mucosal tissue
GO:0003829 IEA beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity
GO:0005975 NAS carbohydrate metabolic process
GO:0006493 TAS protein O-linked glycosylation
GO:0008109 IEA N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0047225 IEA acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity
GO:0048729 IEA tissue morphogenesis
GO:0050892 IEA intestinal absorption
GO:0060993 IEA kidney morphogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060471 gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type protein_coding Danio_rerio
ENSMUSG00000032226 Gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type protein_coding Mus_musculus

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