C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: S-phase cyclin A-associated protein in the ER
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140386 SCAPER 9606 - 15:76347904-76905444 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303521 SCAPER-007 76379709-76905403 retained_intron
  ENST00000324767 SCAPER-201 76348188-76883876 protein_coding
  ENST00000538941 SCAPER-003 76348185-76861944 protein_coding
  ENST00000562890 SCAPER-012 76774932-76797543 processed_transcript
  ENST00000562948 SCAPER-005 76348197-76354651 retained_intron
  ENST00000563246 SCAPER-021 76348453-76354547 processed_transcript
  ENST00000563290 SCAPER-001 76347904-76905335 protein_coding
  ENST00000563688 SCAPER-019 76471096-76621829 retained_intron
  ENST00000563919 SCAPER-009 76841792-76905367 protein_coding
  ENST00000564022 SCAPER-015 76766980-76775064 protein_coding
  ENST00000564177 SCAPER-011 76800275-76905349 protein_coding
  ENST00000564590 SCAPER-002 76702966-76905444 protein_coding
  ENST00000564757 SCAPER-018 76434260-76665658 nonsense_mediated_decay
  ENST00000565372 SCAPER-023 76795392-76905349 protein_coding
  ENST00000565507 SCAPER-004 76702966-76905337 nonsense_mediated_decay
  ENST00000565970 SCAPER-008 76705926-76905279 protein_coding
  ENST00000567601 SCAPER-020 76381564-76385251 processed_transcript
  ENST00000567618 SCAPER-013 76771883-76797608 processed_transcript
  ENST00000568382 SCAPER-010 76795304-76905351 protein_coding
  ENST00000568428 SCAPER-016 76434181-76576951 processed_transcript
  ENST00000568549 SCAPER-014 76771813-76800267 nonsense_mediated_decay
  ENST00000569395 SCAPER-022 76434133-76498597 processed_transcript
  ENST00000569784 SCAPER-017 76471262-76576985 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303521ENST00000324767ENST00000538941ENST00000563246ENST00000563290ENST00000564590ENST00000565372ENST00000565970ENST00000567618
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303521 N/A 0.274±0.00 0.441±0.00 N/A N/A 0.711±0.00 N/A N/A N/A 0.681±0.00 N/A N/A N/A N/A
ENST00000324767 1.349±0.00 0.869±0.00 N/A 6.276±0.00 1.751±0.00 2.071±0.71 6.483±0.00 0.740±0.19 1.213±0.48 2.627±0.00 3.428±0.00 2.456±0.52 1.001±0.30 10.625±3.13
ENST00000538941 N/A 0.760±0.00 N/A N/A N/A N/A N/A 0.424±0.00 N/A 0.609±0.00 N/A N/A N/A 3.191±0.00
ENST00000563246 N/A N/A N/A N/A N/A N/A N/A N/A 1.248±0.00 N/A N/A 4.933±0.00 N/A N/A
ENST00000563290 N/A N/A 0.535±0.00 1.757±0.00 0.369±0.00 N/A N/A N/A N/A 0.785±0.00 N/A 1.149±0.00 0.282±0.00 N/A
ENST00000564590 0.796±0.00 N/A 1.163±0.00 2.333±0.00 0.882±0.00 2.283±0.00 2.173±0.00 N/A 2.289±0.00 3.103±0.00 N/A 2.469±0.00 N/A N/A
ENST00000565372 N/A N/A N/A N/A N/A N/A N/A 6.767±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565970 N/A N/A N/A N/A N/A N/A N/A 1.360±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.436±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000245 CIL_000245_0001 CGP 15:76336724-76905444

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023104 scaper S phase cyclin A-associated protein in the ER protein_coding Danio_rerio
ENSMUSG00000034007 Scaper S phase cyclin A-associated protein in the ER protein_coding Mus_musculus

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