C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000245_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159556-ENSG00000140386 CGP 9606 15:76336724-76905444
GeneTranscriptPositionBiotype
ENSG00000140386 (SCAPER)
S-phase cyclin A-associated protein in the ER 		ENST00000303521 (SCAPER-007) 76379709-76905403 retained_intron
ENST00000324767 (SCAPER-201) 76348188-76883876 protein_coding
ENST00000538941 (SCAPER-003) 76348185-76861944 protein_coding
ENST00000562890 (SCAPER-012) 76774932-76797543 processed_transcript
ENST00000562948 (SCAPER-005) 76348197-76354651 retained_intron
ENST00000563246 (SCAPER-021) 76348453-76354547 processed_transcript
ENST00000563290 (SCAPER-001) 76347904-76905335 protein_coding
ENST00000563688 (SCAPER-019) 76471096-76621829 retained_intron
ENST00000563919 (SCAPER-009) 76841792-76905367 protein_coding
ENST00000564022 (SCAPER-015) 76766980-76775064 protein_coding
ENST00000564177 (SCAPER-011) 76800275-76905349 protein_coding
ENST00000564590 (SCAPER-002) 76702966-76905444 protein_coding
ENST00000564757 (SCAPER-018) 76434260-76665658 nonsense_mediated_decay
ENST00000565372 (SCAPER-023) 76795392-76905349 protein_coding
ENST00000565507 (SCAPER-004) 76702966-76905337 nonsense_mediated_decay
ENST00000565970 (SCAPER-008) 76705926-76905279 protein_coding
ENST00000567601 (SCAPER-020) 76381564-76385251 processed_transcript
ENST00000567618 (SCAPER-013) 76771883-76797608 processed_transcript
ENST00000568382 (SCAPER-010) 76795304-76905351 protein_coding
ENST00000568428 (SCAPER-016) 76434181-76576951 processed_transcript
ENST00000568549 (SCAPER-014) 76771813-76800267 nonsense_mediated_decay
ENST00000569395 (SCAPER-022) 76434133-76498597 processed_transcript
ENST00000569784 (SCAPER-017) 76471262-76576985 processed_transcript
ENSG00000159556 (ISL2)
ISL LIM homeobox 2 		ENST00000290759 (ISL2-001) 76336724-76342476 protein_coding
ENST00000558437 (ISL2-003) 76337438-76338514 retained_intron
ENST00000558656 (ISL2-002) 76336808-76342388 nonsense_mediated_decay
ENSG00000201510 (RN7SKP217)
RNA, 7SK small nuclear pseudogene 217 		ENST00000364640 (RN7SKP217-201) 76736641-76736980 misc_RNA
ENSG00000259514 (RP11-685G9.2)
 ENST00000559539 (RP11-685G9.2-001) 76339609-76342063 antisense
ENSG00000261232 (RP11-331H13.1)
 ENST00000566966 (RP11-331H13.1-001) 76472099-76472365 processed_pseudogene
ENSG00000270036 (RP11-685G9.4)
 ENST00000602530 (RP11-685G9.4-001) 76343642-76344365 lincRNA
CIL_000245_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032318-ENSMUSG00000034007 CGP 10090 9:55538672-55919605
GeneTranscriptPositionBiotype
ENSMUSG00000032318 (Isl2)
insulin related protein 2 (islet 2) 		ENSMUST00000034869 (Isl2-001) 55541148-55546180 protein_coding
ENSMUST00000114290 (Isl2-002) 55541207-55546180 nonsense_mediated_decay
ENSMUST00000164373 (Isl2-003) 55541207-55546178 nonsense_mediated_decay
ENSMUST00000165302 (Isl2-005) 55542336-55544280 retained_intron
ENSMUST00000175950 (Isl2-004) 55538672-55542570 protein_coding
ENSMUSG00000034007 (Scaper)
S phase cyclin A-associated protein in the ER 		ENSMUST00000037408 (Scaper-201) 55549883-55919605 protein_coding
ENSMUSG00000090270 (Gm17226)
predicted gene 17226 		ENSMUST00000166637 (Gm17226-002) 55539560-55540888 antisense
ENSMUST00000171441 (Gm17226-001) 55539549-55540547 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000245_0001ENSG00000140386ENST00000303521ENST00000324767ENST00000538941ENST00000563246ENST00000563290ENST00000564590ENST00000565372ENST00000565970ENST00000567618ENSG00000159556ENST00000290759ENST00000558437ENST00000558656ENSG00000201510ENST00000364640ENSG00000259514ENST00000559539ENSG00000261232ENST00000566966ENSG00000270036ENST00000602530CIL_000245_0002ENSMUSG00000032318ENSMUST00000034869ENSMUST00000114290ENSMUST00000164373ENSMUST00000165302ENSMUST00000175950ENSMUSG00000034007ENSMUST00000037408ENSMUSG00000090270ENSMUST00000166637ENSMUST00000171441
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140386 ENST00000303521 N/A 0.274±0.00 0.441±0.00 N/A N/A 0.711±0.00 N/A N/A N/A 0.681±0.00 N/A N/A N/A N/A
ENST00000324767 1.349±0.00 0.869±0.00 N/A 6.276±0.00 1.751±0.00 2.071±0.71 6.483±0.00 0.740±0.19 1.213±0.48 2.627±0.00 3.428±0.00 2.456±0.52 1.001±0.30 10.625±3.13
ENST00000538941 N/A 0.760±0.00 N/A N/A N/A N/A N/A 0.424±0.00 N/A 0.609±0.00 N/A N/A N/A 3.191±0.00
ENST00000562890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563246 N/A N/A N/A N/A N/A N/A N/A N/A 1.248±0.00 N/A N/A 4.933±0.00 N/A N/A
ENST00000563290 N/A N/A 0.535±0.00 1.757±0.00 0.369±0.00 N/A N/A N/A N/A 0.785±0.00 N/A 1.149±0.00 0.282±0.00 N/A
ENST00000563688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564590 0.796±0.00 N/A 1.163±0.00 2.333±0.00 0.882±0.00 2.283±0.00 2.173±0.00 N/A 2.289±0.00 3.103±0.00 N/A 2.469±0.00 N/A N/A
ENST00000564757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565372 N/A N/A N/A N/A N/A N/A N/A 6.767±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565970 N/A N/A N/A N/A N/A N/A N/A 1.360±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.436±0.00 N/A N/A N/A
ENST00000568382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159556 ENST00000290759 N/A N/A N/A 0.038±0.00 0.145±0.00 0.290±0.13 N/A N/A N/A 0.136±0.00 N/A 0.145±0.00 N/A 0.558±0.35
ENST00000558437 0.032±0.00 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 0.822±0.00
ENST00000558656 N/A 0.021±0.00 N/A N/A 0.023±0.00 0.201±0.01 N/A N/A N/A N/A N/A 0.281±0.23 0.040±0.00 0.186±0.00
ENSG00000201510 ENST00000364640 N/A N/A N/A N/A 0.203±0.00 0.452±0.00 N/A 0.939±0.00 0.645±0.00 0.705±0.00 N/A 0.157±0.00 N/A N/A
ENSG00000259514 ENST00000559539 N/A N/A N/A 0.053±0.00 N/A N/A N/A 0.048±0.00 N/A 0.435±0.00 N/A 0.164±0.00 0.216±0.00 0.501±0.13
ENSG00000261232 ENST00000566966 N/A N/A N/A 0.068±0.00 N/A 0.062±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A 0.115±0.00
ENSG00000270036 ENST00000602530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.196±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032318 ENSMUST00000034869 0.146±0.02 N/A 0.112±0.06 0.519±0.31 N/A 1.242±0.30 N/A 0.017±0.00 0.095±0.07 N/A N/A 0.200±0.13 0.143±0.00 N/A
ENSMUST00000114290 0.010±0.00 0.016±0.00 N/A 0.018±0.00 0.016±0.01 N/A 0.016±0.00 0.004±0.00 N/A 0.008±0.00 N/A 0.168±0.13 0.512±0.62 N/A
ENSMUST00000164373 0.012±0.00 0.005±0.00 N/A 0.014±0.00 0.023±0.01 N/A 0.017±0.01 0.015±0.00 N/A 0.009±0.00 N/A 0.135±0.16 0.118±0.10 0.160±0.00
ENSMUST00000165302 0.212±0.00 N/A N/A N/A 0.081±0.01 1.360±0.27 N/A N/A N/A 0.098±0.05 N/A 0.560±0.34 N/A 0.378±0.05
ENSMUST00000175950 N/A N/A N/A N/A N/A N/A N/A 0.055±0.01 N/A N/A N/A N/A 0.088±0.00 N/A
ENSMUSG00000034007 ENSMUST00000037408 2.680±0.27 1.989±0.92 0.462±0.02 5.545±0.15 2.332±1.05 1.952±0.75 0.606±0.00 1.860±0.36 0.344±0.28 3.425±0.23 0.200±0.00 2.299±1.43 2.072±2.48 7.317±3.41
ENSMUSG00000090270 ENSMUST00000166637 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A
ENSMUST00000171441 N/A N/A 0.033±0.00 0.034±0.01 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.068±0.00 0.123±0.00

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